Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F6	chr14:72397917-72398436	H1-hESC	embryonic stem cell:	n/a	chr14:72398171-72398178 chr14:72398171-72398178 chr14:72398170-72398179 chr14:72398171-72398178 chr14:72398167-72398179

Variant related genes	Relation type
RGS6	TF binding region

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10147777	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10483838	1.00[CEU][hapmap]
rs11846754	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11850532	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17104979	1.00[CEU][hapmap];0.81[JPT][hapmap];0.83[EUR][1000 genomes]
rs17105025	1.00[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap]
rs17105032	1.00[CEU][hapmap];0.82[CHB][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs17105061	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs1860105	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs1989628	0.83[EUR][1000 genomes]
rs2190872	0.82[JPT][hapmap]
rs2238274	0.82[JPT][hapmap]
rs2238275	1.00[CEU][hapmap]
rs2238276	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs2238283	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2238285	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs23219	0.91[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs2332701	0.83[EUR][1000 genomes]
rs35077074	0.81[ASN][1000 genomes]
rs35479711	0.80[ASN][1000 genomes]
rs36327	0.92[ASN][1000 genomes]
rs4902960	1.00[CEU][hapmap];0.80[JPT][hapmap];0.83[EUR][1000 genomes]
rs4902965	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs56731686	0.83[EUR][1000 genomes]
rs59307289	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs764624	1.00[CEU][hapmap];0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	esv3425540	chr14:72397724-72400572	Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72397800-72398600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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