Variant report

Variant	rs1860105
Chromosome Location	chr14:72456913-72456914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10150071	0.82[ASN][1000 genomes]
rs10483838	1.00[CEU][hapmap];0.81[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs12884777	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs17104975	0.93[JPT][hapmap]
rs17104979	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17105025	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17105032	1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17105061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1989628	0.96[ASN][1000 genomes]
rs2190872	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2238274	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238275	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238276	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.85[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2238278	0.88[ASN][1000 genomes]
rs2238283	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap]
rs2238285	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap]
rs2239266	0.81[JPT][hapmap]
rs2239270	1.00[CEU][hapmap];0.80[JPT][hapmap]
rs2283422	0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[ASN][1000 genomes]
rs23219	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs2332701	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3784054	0.81[JPT][hapmap]
rs41389946	0.81[JPT][hapmap]
rs41488847	0.81[JPT][hapmap]
rs4902960	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs4902961	0.94[JPT][hapmap];0.83[ASN][1000 genomes]
rs4902965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56661004	0.86[ASN][1000 genomes]
rs56731686	0.96[ASN][1000 genomes]
rs58002698	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60545259	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7143919	0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs7156200	0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs720391	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73293246	0.86[ASN][1000 genomes]
rs74060440	0.86[ASN][1000 genomes]
rs764624	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72446000-72457000	Weak transcription	Right Ventricle	heart
2	chr14:72453200-72457000	Enhancers	Fetal Heart	heart
3	chr14:72453600-72457000	Strong transcription	Cortex derived primary cultured neurospheres	brain
4	chr14:72456400-72457200	Weak transcription	Left Ventricle	heart
5	chr14:72456800-72457200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:72456800-72457200	Enhancers	Placenta	Placenta
7	chr14:72456800-72457600	Enhancers	Fetal Muscle Leg	muscle

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