Variant report

Variant	rs35368076
Chromosome Location	chr3:34292921-34292922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13067818	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13075807	1.00[EUR][1000 genomes]
rs13080986	1.00[EUR][1000 genomes]
rs2139172	0.88[EUR][1000 genomes]
rs34050472	0.98[EUR][1000 genomes]
rs34272332	0.96[EUR][1000 genomes]
rs34475061	0.88[EUR][1000 genomes]
rs34915338	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35489200	1.00[EUR][1000 genomes]
rs56296977	0.88[EUR][1000 genomes]
rs71325181	1.00[EUR][1000 genomes]
rs7640851	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	esv3324522	chr3:34291348-34293496	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3421921	chr3:34291748-34293096	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34285800-34293600	Weak transcription	Aorta	Aorta
2	chr3:34291400-34297000	Weak transcription	Thymus	Thymus
3	chr3:34292600-34297400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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