Variant report

Variant	rs7640851
Chromosome Location	chr3:34301429-34301430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13061194	1.00[ASN][1000 genomes]
rs13067818	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075807	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080986	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280089	1.00[ASN][1000 genomes]
rs2139172	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34050472	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34272332	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34475061	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34633026	1.00[ASN][1000 genomes]
rs34811734	1.00[ASN][1000 genomes]
rs34915338	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35368076	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35489200	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4459843	1.00[ASN][1000 genomes]
rs56296977	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325180	1.00[ASN][1000 genomes]
rs71325181	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73827388	1.00[ASN][1000 genomes]
rs7630319	1.00[ASN][1000 genomes]
rs7652464	1.00[ASN][1000 genomes]
rs9831758	1.00[ASN][1000 genomes]
rs9852050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34296000-34304000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr3:34297000-34301800	Weak transcription	Fetal Intestine Small	intestine
3	chr3:34298000-34301800	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:34298000-34302000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr3:34298000-34302000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr3:34298200-34302000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:34298200-34302000	Weak transcription	Fetal Lung	lung
8	chr3:34298400-34302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr3:34298600-34303600	Weak transcription	Aorta	Aorta
10	chr3:34299200-34305400	Enhancers	Fetal Intestine Large	intestine
11	chr3:34299600-34305200	Enhancers	Fetal Thymus	thymus
12	chr3:34300000-34302600	Enhancers	Fetal Brain Female	brain
13	chr3:34300400-34302000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr3:34300400-34302000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:34300600-34301600	Weak transcription	Fetal Heart	heart
16	chr3:34300600-34302400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr3:34300600-34302400	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr3:34300600-34302400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr3:34300600-34302600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr3:34300600-34305000	Enhancers	Dnd41	blood
21	chr3:34300600-34305200	Enhancers	Thymus	Thymus
22	chr3:34300800-34302000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:34300800-34302400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:34300800-34302400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr3:34300800-34302400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr3:34300800-34302400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr3:34301200-34305400	Enhancers	Fetal Brain Male	brain
28	chr3:34301400-34302400	Weak transcription	Placenta	Placenta
29	chr3:34301400-34302600	Enhancers	Fetal Muscle Leg	muscle
30	chr3:34301400-34303800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:34301400-34304000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links