Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13061194	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067818	1.00[ASN][1000 genomes]
rs13075807	1.00[ASN][1000 genomes]
rs13080986	1.00[ASN][1000 genomes]
rs17280089	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2139172	1.00[ASN][1000 genomes]
rs34050472	1.00[ASN][1000 genomes]
rs34272332	1.00[ASN][1000 genomes]
rs34475061	1.00[ASN][1000 genomes]
rs34633026	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34811734	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915338	1.00[ASN][1000 genomes]
rs35489200	1.00[ASN][1000 genomes]
rs4459843	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296977	1.00[ASN][1000 genomes]
rs71325181	1.00[ASN][1000 genomes]
rs73827388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630319	1.00[ASN][1000 genomes]
rs7640851	1.00[ASN][1000 genomes]
rs7652464	1.00[ASN][1000 genomes]
rs9831758	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852050	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34280200-34283200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr3:34281600-34283800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:34281800-34283200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:34282000-34283400	Enhancers	Thymus	Thymus

Quick Search: