Variant report
| Variant | rs73827388 |
|---|---|
| Chromosome Location | chr3:34264321-34264322 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs13061194 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13067818 | 1.00[ASN][1000 genomes] |
| rs13075807 | 1.00[ASN][1000 genomes] |
| rs13080986 | 1.00[ASN][1000 genomes] |
| rs17280089 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2139172 | 1.00[ASN][1000 genomes] |
| rs34050472 | 1.00[ASN][1000 genomes] |
| rs34272332 | 1.00[ASN][1000 genomes] |
| rs34475061 | 1.00[ASN][1000 genomes] |
| rs34633026 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34811734 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34915338 | 1.00[ASN][1000 genomes] |
| rs35489200 | 1.00[ASN][1000 genomes] |
| rs4459843 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56296977 | 1.00[ASN][1000 genomes] |
| rs71325180 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71325181 | 1.00[ASN][1000 genomes] |
| rs7630319 | 1.00[ASN][1000 genomes] |
| rs7640851 | 1.00[ASN][1000 genomes] |
| rs7652464 | 1.00[ASN][1000 genomes] |
| rs9831758 | 0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9852050 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001599 | chr3:34149575-34437701 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv536533 | chr3:34149575-34437701 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv876682 | chr3:34149814-34401451 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv916961 | chr3:34203879-34506554 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | esv3463307 | chr3:34263978-34265637 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 6 | esv3463308 | chr3:34264076-34265533 | Weak transcription Flanking Active TSS Enhancers | n/a | n/a | inside rSNPs | n/a |
| 7 | esv3463310 | chr3:34264076-34265533 | Enhancers Weak transcription Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| 8 | esv12957 | chr3:34264096-34265440 | Weak transcription Enhancers Flanking Active TSS | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34261800-34264400 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
| 2 | chr3:34264200-34265000 | Enhancers | HUVEC | blood vessel |
