Variant report

Variant	rs13075807
Chromosome Location	chr3:34309871-34309872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:34307556..34310522-chr3:34325293..34326875,2	K562	blood:
2	chr3:34307945..34310504-chr3:34315183..34316833,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PDCD6IP-1	chr3:34309814-34310303	XLOC_002613
2	lnc-PDCD6IP-1	chr3:34309814-34310187	XLOC_002613
3	lnc-PDCD6IP-2	chr3:34309814-34311242	NONHSAT088957

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12630202	1.00[CHB][hapmap]
rs13061194	1.00[ASN][1000 genomes]
rs13067818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080986	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280089	1.00[ASN][1000 genomes]
rs2053425	1.00[CHB][hapmap]
rs2139172	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34050472	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34272332	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34475061	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34633026	1.00[ASN][1000 genomes]
rs34811734	1.00[ASN][1000 genomes]
rs34915338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35368076	1.00[EUR][1000 genomes]
rs35489200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4459843	1.00[ASN][1000 genomes]
rs56296977	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325180	1.00[ASN][1000 genomes]
rs71325181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73827388	1.00[ASN][1000 genomes]
rs7630319	1.00[ASN][1000 genomes]
rs7640851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652464	1.00[ASN][1000 genomes]
rs9831758	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9852050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34305200-34311600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr3:34309000-34310200	Enhancers	Fetal Intestine Small	intestine
3	chr3:34309000-34310400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr3:34309200-34310000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr3:34309200-34310000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr3:34309200-34310000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:34309200-34310000	Enhancers	Fetal Heart	heart
8	chr3:34309200-34310000	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr3:34309200-34310200	Enhancers	Fetal Intestine Large	intestine
10	chr3:34309200-34310200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr3:34309200-34310400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:34309400-34310000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:34309400-34310600	Enhancers	Thymus	Thymus
14	chr3:34309600-34310000	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:34309600-34310000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr3:34309600-34310000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr3:34309600-34310000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:34309600-34310200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:34309600-34310200	Enhancers	Fetal Muscle Leg	muscle
20	chr3:34309600-34310200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr3:34309600-34310200	Enhancers	K562	blood
22	chr3:34309600-34310600	Enhancers	Fetal Thymus	thymus
23	chr3:34309800-34310200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:34309800-34311000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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