Variant report

Variant	rs71325181
Chromosome Location	chr3:34308294-34308295
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:34237804..34239515-chr3:34306998..34309662,2	K562	blood:
2	chr3:34307556..34310522-chr3:34325293..34326875,2	K562	blood:
3	chr3:34307945..34310504-chr3:34315183..34316833,2	MCF-7	breast:
4	chr3:34306937..34309088-chr3:34310627..34313215,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13061194	1.00[ASN][1000 genomes]
rs13067818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075807	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080986	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17280089	1.00[ASN][1000 genomes]
rs2139172	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34050472	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34272332	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34475061	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34633026	1.00[ASN][1000 genomes]
rs34811734	1.00[ASN][1000 genomes]
rs34915338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35368076	1.00[EUR][1000 genomes]
rs35489200	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4459843	1.00[ASN][1000 genomes]
rs56296977	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325180	1.00[ASN][1000 genomes]
rs73827388	1.00[ASN][1000 genomes]
rs7630319	1.00[ASN][1000 genomes]
rs7640851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7652464	1.00[ASN][1000 genomes]
rs9831758	1.00[ASN][1000 genomes]
rs9852050	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1001752	chr3:34294343-34323331	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34302000-34309400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:34303800-34309800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr3:34304600-34309600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr3:34304800-34309200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr3:34305200-34309000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:34305200-34309000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr3:34305200-34311600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:34305400-34309000	Weak transcription	Fetal Intestine Small	intestine
9	chr3:34305400-34309200	Weak transcription	Fetal Intestine Large	intestine
10	chr3:34306200-34308800	Enhancers	Fetal Heart	heart
11	chr3:34306600-34309200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:34306600-34309600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:34307000-34309200	Weak transcription	Aorta	Aorta
14	chr3:34307000-34309600	Weak transcription	Fetal Muscle Leg	muscle
15	chr3:34307000-34309600	Weak transcription	Fetal Thymus	thymus
16	chr3:34307200-34309200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:34307400-34309200	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:34307800-34309200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr3:34307800-34309400	Weak transcription	Thymus	Thymus

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