Variant report
| Variant | rs34272332 |
|---|---|
| Chromosome Location | chr3:34316040-34316041 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:34307945..34310504-chr3:34315183..34316833,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs13061194 | 1.00[ASN][1000 genomes] |
| rs13067818 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13075807 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13080986 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17280089 | 1.00[ASN][1000 genomes] |
| rs2139172 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34050472 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34475061 | 0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34633026 | 1.00[ASN][1000 genomes] |
| rs34811734 | 1.00[ASN][1000 genomes] |
| rs34915338 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35368076 | 0.96[EUR][1000 genomes] |
| rs35489200 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4459843 | 1.00[ASN][1000 genomes] |
| rs56296977 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71325180 | 1.00[ASN][1000 genomes] |
| rs71325181 | 0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73827388 | 1.00[ASN][1000 genomes] |
| rs7630319 | 1.00[ASN][1000 genomes] |
| rs7640851 | 0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7652464 | 1.00[ASN][1000 genomes] |
| rs9831758 | 1.00[ASN][1000 genomes] |
| rs9852050 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1001599 | chr3:34149575-34437701 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv536533 | chr3:34149575-34437701 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 3 | nsv876682 | chr3:34149814-34401451 | Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 4 | nsv916961 | chr3:34203879-34506554 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 5 | nsv1001752 | chr3:34294343-34323331 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:34311200-34317000 | Weak transcription | Thymus | Thymus |
