Variant report

Variant	rs9831758
Chromosome Location	chr3:34255052-34255053
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:34251179..34253231-chr3:34254856..34256423,2	K562	blood:
2	chr3:34254296..34256628-chr3:34259423..34261115,2	K562	blood:
3	chr3:34244429..34246745-chr3:34254432..34256118,2	K562	blood:

Variant related genes	Relation type
ENSG00000236452	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12630202	1.00[CHB][hapmap]
rs13061194	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13067818	1.00[ASN][1000 genomes]
rs13075807	1.00[ASN][1000 genomes]
rs13080986	1.00[ASN][1000 genomes]
rs17280089	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2053425	1.00[CHB][hapmap]
rs2139172	1.00[ASN][1000 genomes]
rs34050472	1.00[ASN][1000 genomes]
rs34272332	1.00[ASN][1000 genomes]
rs34475061	1.00[ASN][1000 genomes]
rs34633026	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34811734	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34915338	1.00[ASN][1000 genomes]
rs35489200	1.00[ASN][1000 genomes]
rs4459843	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56296977	1.00[ASN][1000 genomes]
rs71325180	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71325181	1.00[ASN][1000 genomes]
rs73827388	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630319	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7640851	1.00[ASN][1000 genomes]
rs7652464	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844552	0.80[EUR][1000 genomes]
rs9852050	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001599	chr3:34149575-34437701	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv536533	chr3:34149575-34437701	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv876682	chr3:34149814-34401451	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv916961	chr3:34203879-34506554	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:34252600-34255400	Enhancers	HUVEC	blood vessel
2	chr3:34253200-34255200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:34253400-34255200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:34253400-34255400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:34253400-34257200	Enhancers	Fetal Intestine Small	intestine
6	chr3:34253600-34255400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr3:34253600-34255600	Enhancers	Fetal Intestine Large	intestine
8	chr3:34254000-34257800	Weak transcription	Primary B cells from peripheral blood	blood
9	chr3:34254000-34258400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:34254200-34255200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:34254200-34255200	Weak transcription	Stomach Mucosa	stomach
12	chr3:34254200-34257800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr3:34254400-34255600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:34254600-34255200	Enhancers	Brain Substantia Nigra	brain
15	chr3:34255000-34255200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:34255000-34255200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr3:34255000-34255200	Enhancers	Right Atrium	heart
18	chr3:34255000-34255400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr3:34255000-34255400	Enhancers	Aorta	Aorta
20	chr3:34255000-34255400	Enhancers	Brain Angular Gyrus	brain
21	chr3:34255000-34255400	Enhancers	Left Ventricle	heart

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