Variant report

Variant	rs35370435
Chromosome Location	chr10:898205-898206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:892165..895141-chr10:896184..898435,2	MCF-7	breast:
2	chr10:881731..883394-chr10:897449..900217,2	K562	blood:
3	chr10:897785..900059-chr10:902381..904069,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs1013504	0.81[AMR][1000 genomes]
rs11253443	0.87[EUR][1000 genomes]
rs11253444	0.87[EUR][1000 genomes]
rs11253445	0.87[EUR][1000 genomes]
rs11253446	0.87[EUR][1000 genomes]
rs11253458	0.80[EUR][1000 genomes]
rs11253459	0.80[EUR][1000 genomes]
rs11253460	0.80[EUR][1000 genomes]
rs11253462	0.80[EUR][1000 genomes]
rs11253467	0.80[EUR][1000 genomes]
rs11253468	0.80[EUR][1000 genomes]
rs11253473	0.80[EUR][1000 genomes]
rs11253475	0.80[EUR][1000 genomes]
rs11817793	0.80[EUR][1000 genomes]
rs11818288	0.82[EUR][1000 genomes]
rs11818325	0.80[EUR][1000 genomes]
rs12244253	0.80[EUR][1000 genomes]
rs12249828	0.80[EUR][1000 genomes]
rs12250937	0.80[EUR][1000 genomes]
rs12761180	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12762228	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12768348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12769002	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12771179	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12774985	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12776659	0.87[EUR][1000 genomes]
rs12778271	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12781100	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13377166	0.80[EUR][1000 genomes]
rs1555899	0.80[EUR][1000 genomes]
rs34251037	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34278722	0.87[EUR][1000 genomes]
rs34318754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34487581	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs34527494	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34847097	0.80[EUR][1000 genomes]
rs34885925	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34982663	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35443149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35666723	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35667562	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35957139	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35967867	0.87[EUR][1000 genomes]
rs35968821	0.80[EUR][1000 genomes]
rs55697724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55708963	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56222464	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61830900	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61830926	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61830931	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61830933	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61831436	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7067865	0.80[EUR][1000 genomes]
rs7074642	0.80[EUR][1000 genomes]
rs7088956	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72776479	0.87[EUR][1000 genomes]
rs72778228	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7914758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916591	chr10:224406-1088734	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv540386	chr10:224406-1197416	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv1054659	chr10:611444-1133578	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
4	nsv948602	chr10:708293-944641	Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv949063	chr10:708293-974870	Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv466697	chr10:734229-1129527	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
7	nsv549765	chr10:734229-1129527	Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
8	nsv1043812	chr10:776547-981126	Strong transcription Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv540406	chr10:776547-981126	Bivalent Enhancer Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv530116	chr10:776548-1401075	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
11	nsv948978	chr10:813426-1019115	Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	nsv1048707	chr10:834439-915534	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
13	nsv1052540	chr10:887562-1300134	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
14	nsv540407	chr10:887562-1300134	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:852200-956400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:870600-959400	Weak transcription	Stomach Mucosa	stomach
3	chr10:875400-903000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:883200-917200	Weak transcription	Colonic Mucosa	Colon
5	chr10:886400-902800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr10:886800-924400	Weak transcription	Fetal Brain Male	brain
7	chr10:890000-900000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:890400-901800	Weak transcription	Colon Smooth Muscle	Colon
9	chr10:890400-902200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr10:890400-902600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr10:890400-916000	Weak transcription	Aorta	Aorta
12	chr10:890800-901200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr10:891600-898800	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr10:891600-901400	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:892200-901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:892400-902400	Weak transcription	Brain Hippocampus Middle	brain
17	chr10:892600-903000	Weak transcription	Brain Angular Gyrus	brain
18	chr10:892600-909400	Weak transcription	Small Intestine	intestine
19	chr10:892800-909000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr10:892800-909000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr10:893000-899600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:893000-900800	Strong transcription	Fetal Lung	lung
23	chr10:893000-902400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr10:893000-902400	Weak transcription	Right Atrium	heart
25	chr10:893000-902800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr10:893000-907600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:893000-909400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr10:893200-898600	Weak transcription	NH-A	brain
29	chr10:893200-900800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr10:893200-902800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr10:893200-902800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr10:893200-905400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr10:893200-907000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr10:893200-908200	Weak transcription	Spleen	Spleen
35	chr10:893400-902400	Weak transcription	Right Ventricle	heart
36	chr10:893400-907800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr10:894000-899600	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr10:894000-912400	Weak transcription	Psoas Muscle	Psoas
39	chr10:894200-901600	Weak transcription	Gastric	stomach
40	chr10:894200-902800	Weak transcription	NHLF	lung
41	chr10:894400-906200	Weak transcription	Ovary	ovary
42	chr10:894600-902600	Strong transcription	HSMM	muscle
43	chr10:895000-899200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr10:895200-898400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr10:895200-899200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:895200-899400	Weak transcription	Left Ventricle	heart
47	chr10:895400-899000	Weak transcription	Liver	Liver
48	chr10:895400-903600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr10:895600-898600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:895600-899200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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