Variant report

Variant	rs35522186
Chromosome Location	chr5:57854055-57854056
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CTD-2117L12.1.1-2	chr5:57854013-57854070	NR_109904

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10044655	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10051454	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10057291	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10060540	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10065306	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10070159	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10471453	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10471454	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472066	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10514852	0.82[ASN][1000 genomes]
rs10940616	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12153002	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13173334	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13174658	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13181639	0.92[ASN][1000 genomes]
rs13184329	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17773723	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17773753	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28696147	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4412081	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67873319	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57853400-57854200	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr5:57853400-57854200	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr5:57853400-57854200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr5:57853600-57854200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr5:57853600-57854200	Active TSS	H9 Cell Line	embryonic stem cell
6	chr5:57853600-57854200	Active TSS	HUES64 Cell Line	embryonic stem cell
7	chr5:57853600-57854200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:57853600-57854400	Active TSS	Placenta	Placenta
9	chr5:57853800-57854200	Active TSS	H1 Cell Line	embryonic stem cell
10	chr5:57853800-57854200	Active TSS	iPS-18 Cell Line	embryonic stem cell

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