Variant report

Variant	rs13173334
Chromosome Location	chr5:57778914-57778915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10044655	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10051454	0.94[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10057291	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10060540	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10065306	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10070159	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10071487	0.87[CEU][hapmap]
rs10471453	0.81[AMR][1000 genomes]
rs10471454	0.80[EUR][1000 genomes]
rs10472066	0.82[EUR][1000 genomes]
rs10940616	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12153002	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13174658	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13184329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs154492	1.00[AFR][1000 genomes]
rs17773723	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17773753	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2591918	0.81[CEU][hapmap]
rs2591919	0.87[CEU][hapmap]
rs35522186	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs39967	1.00[AFR][1000 genomes]
rs41088	1.00[AFR][1000 genomes]
rs42740	1.00[AFR][1000 genomes]
rs4412081	0.88[CEU][hapmap]
rs67873319	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs697134	0.82[CEU][hapmap];1.00[AFR][1000 genomes]
rs702709	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs702720	0.83[CEU][hapmap];1.00[AFR][1000 genomes]
rs832631	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs832636	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405804	chr5:57774995-57779993	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv513241	chr5:57776969-57779389	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv3423189	chr5:57777045-57779543	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57774200-57779000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:57774200-57779400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:57774200-57780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:57774400-57779000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:57778200-57782800	Enhancers	Primary B cells from peripheral blood	blood
7	chr5:57778400-57779400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:57778600-57779400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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