Variant report

Variant	rs10051454
Chromosome Location	chr5:57788035-57788036
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10044655	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10057291	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10060540	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10065306	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10070159	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10071487	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10471453	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10471454	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10472066	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10514852	0.86[ASN][1000 genomes]
rs10940616	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12153002	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13173334	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13174658	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181639	0.81[ASN][1000 genomes]
rs13184329	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs154492	1.00[AFR][1000 genomes]
rs17773723	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773753	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591918	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2591919	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs28696147	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35522186	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs39967	1.00[AFR][1000 genomes]
rs41088	1.00[AFR][1000 genomes]
rs42740	1.00[AFR][1000 genomes]
rs4412081	0.94[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67873319	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697134	1.00[AFR][1000 genomes]
rs702709	1.00[AFR][1000 genomes]
rs702720	1.00[AFR][1000 genomes]
rs7704785	0.81[CHB][hapmap]
rs832631	1.00[AFR][1000 genomes]
rs832636	1.00[AFR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57786200-57788200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:57786800-57795800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:57787200-57788200	Active TSS	Monocytes-CD14+_RO01746	blood
4	chr5:57787200-57788400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr5:57787200-57788600	Active TSS	Primary monocytes fromperipheralblood	blood
6	chr5:57787200-57789000	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:57787200-57789400	Active TSS	Primary B cells from peripheral blood	blood
8	chr5:57787400-57788800	Active TSS	Primary T cells from cord blood	blood
9	chr5:57787400-57788800	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr5:57787400-57799400	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:57787600-57788800	Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr5:57787600-57788800	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
13	chr5:57787600-57789600	Flanking Active TSS	Primary hematopoietic stem cells	blood
14	chr5:57787800-57788200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr5:57788000-57788200	Active TSS	Primary B cells from cord blood	blood
16	chr5:57788000-57789600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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