Variant report

Variant	rs10065306
Chromosome Location	chr5:57803098-57803099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10044655	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10051454	0.93[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10057291	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060540	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10070159	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap]
rs10471453	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10471454	0.88[EUR][1000 genomes]
rs10472066	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10514852	0.89[ASN][1000 genomes]
rs10940616	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12153002	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12153332	1.00[YRI][hapmap]
rs12186775	0.82[JPT][hapmap]
rs13173334	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13174658	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13178332	0.82[JPT][hapmap]
rs13181639	0.84[ASN][1000 genomes]
rs13184329	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13359188	1.00[YRI][hapmap]
rs154492	0.83[AFR][1000 genomes]
rs17773723	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17773753	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2591918	0.93[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs2591919	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap]
rs28696147	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35522186	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs39967	0.83[AFR][1000 genomes]
rs41088	0.83[AFR][1000 genomes]
rs42740	0.83[AFR][1000 genomes]
rs4412081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs67873319	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs697134	1.00[ASW][hapmap];0.83[AFR][1000 genomes]
rs702709	0.83[AFR][1000 genomes]
rs702720	0.83[AFR][1000 genomes]
rs7704785	0.81[CHB][hapmap]
rs832631	0.83[AFR][1000 genomes]
rs832636	0.83[AFR][1000 genomes]
rs963989	0.82[JPT][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10065306	GZMK	cis	cerebellum	SCAN
rs10065306	FLJ33641	cis	multi-tissue	Pritchard

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57796200-57803200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr5:57797800-57804200	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:57798800-57804400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:57799800-57803200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr5:57800000-57803200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:57800600-57803800	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:57800600-57803800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
8	chr5:57802200-57803400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:57802600-57804400	Enhancers	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links