Variant report

Variant	rs13184329
Chromosome Location	chr5:57780975-57780976
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10044655	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10051454	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10057291	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10060540	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10065306	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10070159	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10071487	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs10471453	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10471454	0.83[EUR][1000 genomes]
rs10472066	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10514852	0.86[ASN][1000 genomes]
rs10940616	0.81[CEU][hapmap];1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12153002	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13173334	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13174658	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13181639	0.81[ASN][1000 genomes]
rs154492	1.00[AFR][1000 genomes]
rs17773723	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773753	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2591918	0.87[CEU][hapmap];1.00[CHB][hapmap]
rs2591919	0.93[CEU][hapmap];1.00[CHB][hapmap]
rs28696147	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35522186	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs39967	1.00[AFR][1000 genomes]
rs41088	1.00[AFR][1000 genomes]
rs42740	1.00[AFR][1000 genomes]
rs4412081	0.94[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67873319	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs697134	1.00[AFR][1000 genomes]
rs702709	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs702720	1.00[AFR][1000 genomes]
rs7704785	0.81[CHB][hapmap]
rs832631	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs832636	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57778200-57782800	Enhancers	Primary B cells from peripheral blood	blood
3	chr5:57779000-57782400	Enhancers	Monocytes-CD14+_RO01746	blood
4	chr5:57779400-57783600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr5:57780000-57781200	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr5:57780400-57781000	Flanking Active TSS	Primary B cells from cord blood	blood
7	chr5:57780400-57783000	Enhancers	Primary neutrophils fromperipheralblood	blood

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