Variant report

Variant	rs35724400
Chromosome Location	chr14:69830183-69830184
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69826955..69830951-chr14:69833365..69835395,4	MCF-7	breast:
2	chr14:69830172..69832846-chr14:69834096..69836793,3	K562	blood:
3	chr14:69830050..69832763-chr14:69863489..69865045,2	K562	blood:
4	chr14:69754386..69755016-chr14:69829801..69830400,2	MCF-7	breast:
5	chr14:69714529..69715402-chr14:69829818..69830391,3	MCF-7	breast:
6	chr14:69822349..69827857-chr14:69829114..69832930,7	MCF-7	breast:
7	chr14:69714714..69715386-chr14:69829473..69830328,2	MCF-7	breast:
8	chr14:69709053..69710185-chr14:69829524..69830405,6	MCF-7	breast:
9	chr14:69829365..69831341-chr14:69925811..69928602,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11158804	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232173	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589991	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879303	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879627	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880219	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883441	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884978	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893687	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12896978	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106973	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34218656	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34230540	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433939	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34516562	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621266	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625331	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34859711	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34862239	0.95[ASN][1000 genomes]
rs34864264	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953569	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515794	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35532206	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35657710	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695471	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35828634	0.96[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs36027932	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037391	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3784141	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61980352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980353	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980354	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982360	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982397	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982398	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982401	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982420	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982422	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982424	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67081339	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423357	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145781	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625682	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456334	chr14:69793624-69831037	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564966	chr14:69793624-69831037	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69815600-69838800	Weak transcription	Brain Germinal Matrix	brain
2	chr14:69818600-69842800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:69821000-69838800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:69821000-69839600	Weak transcription	Fetal Brain Female	brain
5	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
6	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:69827600-69838800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr14:69828000-69838800	Weak transcription	Primary B cells from cord blood	blood
9	chr14:69828000-69838800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:69828000-69843000	Weak transcription	GM12878-XiMat	blood
11	chr14:69829400-69832000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr14:69829600-69830200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr14:69829600-69830200	Enhancers	NHDF-Ad	bronchial
14	chr14:69829600-69830400	Enhancers	Brain Angular Gyrus	brain
15	chr14:69829600-69830600	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr14:69829600-69831200	Enhancers	Brain Hippocampus Middle	brain
17	chr14:69829600-69831400	Enhancers	Brain Cingulate Gyrus	brain
18	chr14:69830000-69830200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr14:69830000-69830200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr14:69830000-69831000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:69830000-69831200	Enhancers	Brain Anterior Caudate	brain
22	chr14:69830000-69831200	Enhancers	Brain Substantia Nigra	brain
23	chr14:69830000-69847200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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