Variant report

Variant	rs61982360
Chromosome Location	chr14:69852323-69852324
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69618300..69620469-chr14:69851815..69853623,2	MCF-7	breast:
2	chr14:69851342..69853414-chr14:69856070..69857850,2	MCF-7	breast:
3	chr14:69852137..69854406-chr14:69863608..69866088,3	MCF-7	breast:
4	chr14:69849656..69852340-chr14:69856978..69858578,2	MCF-7	breast:
5	chr14:69824029..69825880-chr14:69851725..69853417,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139990	Chromatin interaction
ENSG00000100632	Chromatin interaction
ENSG00000029364	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11158804	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232173	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589991	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879303	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879627	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880219	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883441	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884978	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893687	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12896978	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106973	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34218656	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34230540	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433939	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34516562	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621266	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625331	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34859711	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34862239	0.95[ASN][1000 genomes]
rs34864264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953569	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515794	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35532206	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35657710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695471	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724400	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35828634	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36027932	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037391	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3784141	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61980352	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980353	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980354	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982397	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982398	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982401	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982420	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982422	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982424	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67081339	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423357	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144886	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145781	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625682	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69821800-69852400	Weak transcription	Spleen	Spleen
2	chr14:69824200-69864000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:69831200-69852400	Weak transcription	Brain Substantia Nigra	brain
4	chr14:69835800-69852400	Weak transcription	Small Intestine	intestine
5	chr14:69837200-69860000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr14:69840800-69852400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:69841000-69863400	Strong transcription	A549	lung
8	chr14:69841200-69863000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr14:69841400-69862800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:69841600-69858000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69841600-69863400	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr14:69841800-69857800	Strong transcription	Primary T cells fromperipheralblood	blood
13	chr14:69841800-69863000	Strong transcription	HUES64 Cell Line	embryonic stem cell
14	chr14:69841800-69863800	Weak transcription	Stomach Mucosa	stomach
15	chr14:69842000-69852400	Weak transcription	Fetal Brain Male	brain
16	chr14:69842000-69858600	Weak transcription	Fetal Heart	heart
17	chr14:69842200-69857800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr14:69842400-69854400	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr14:69842600-69863200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr14:69842800-69854800	Strong transcription	Primary T cells from cord blood	blood
21	chr14:69842800-69857800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:69842800-69862800	Strong transcription	Fetal Thymus	thymus
23	chr14:69843000-69854000	Strong transcription	Hela-S3	cervix
24	chr14:69843400-69856600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:69843400-69863000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr14:69843600-69852400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr14:69843600-69862600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr14:69843600-69863200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr14:69843800-69852400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
30	chr14:69843800-69852400	Weak transcription	Brain Angular Gyrus	brain
31	chr14:69843800-69852600	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:69843800-69856400	Strong transcription	Dnd41	blood
33	chr14:69843800-69859800	Weak transcription	Right Ventricle	heart
34	chr14:69843800-69860000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:69843800-69863000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr14:69843800-69863400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:69843800-69863400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr14:69843800-69863400	Strong transcription	HSMM	muscle
39	chr14:69843800-69863800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr14:69845800-69857600	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr14:69845800-69858600	Strong transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:69845800-69859200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr14:69845800-69863000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:69845800-69863400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr14:69846000-69857600	Strong transcription	Liver	Liver
46	chr14:69846000-69862200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr14:69846000-69863000	Strong transcription	Primary monocytes fromperipheralblood	blood
48	chr14:69846000-69863000	Strong transcription	HUVEC	blood vessel
49	chr14:69846000-69863000	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr14:69846200-69854200	Strong transcription	NH-A	brain

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