Variant report

Variant	rs61982398
Chromosome Location	chr14:69892945-69892946
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:69891176..69893252-chr14:69916771..69918608,2	MCF-7	breast:
2	chr14:69863807..69866662-chr14:69890965..69893248,2	K562	blood:

Variant related genes	Relation type
ENSG00000029364	Chromatin interaction
ENSG00000100632	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11158804	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12232173	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589991	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879303	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879627	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12880219	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12883441	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12884978	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893687	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12896978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17106973	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34218656	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34230540	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34433939	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34516562	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34621266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34625331	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34859711	0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34862239	0.95[ASN][1000 genomes]
rs34864264	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34953569	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35515794	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35532206	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35657710	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35695471	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35724400	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35828634	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs36027932	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36037391	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3784141	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61980352	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980353	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61980354	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982360	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61982397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982401	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61982420	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982422	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61982424	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67081339	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71423357	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7144886	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7145781	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72625682	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69868000-69923200	Weak transcription	Esophagus	oesophagus
2	chr14:69871000-69902800	Weak transcription	Psoas Muscle	Psoas
3	chr14:69885600-69899400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr14:69886400-69908200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr14:69886800-69893000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:69887400-69913000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:69888400-69895800	Weak transcription	Fetal Kidney	kidney
8	chr14:69889200-69922400	Weak transcription	Brain Substantia Nigra	brain
9	chr14:69889200-69923400	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:69889400-69923200	Weak transcription	Pancreas	Pancrea
11	chr14:69889600-69906400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:69889800-69895600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:69890000-69895600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr14:69890000-69922400	Weak transcription	Fetal Brain Male	brain
15	chr14:69890200-69894400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr14:69890200-69894600	Strong transcription	Primary T helper cells fromperipheralblood	blood
17	chr14:69890200-69894800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:69890200-69894800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr14:69890200-69894800	Strong transcription	GM12878-XiMat	blood
20	chr14:69890200-69895600	Strong transcription	Dnd41	blood
21	chr14:69890400-69894000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr14:69890400-69894000	Strong transcription	Thymus	Thymus
23	chr14:69890400-69894400	Strong transcription	Fetal Intestine Large	intestine
24	chr14:69890400-69894600	Strong transcription	Primary B cells from peripheral blood	blood
25	chr14:69890400-69894800	Strong transcription	Fetal Muscle Leg	muscle
26	chr14:69890400-69895800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr14:69890600-69893000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:69890600-69893600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr14:69890600-69894600	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr14:69890600-69894800	Strong transcription	Primary T helper cells PMA-I stimulated	--
31	chr14:69890600-69895200	Strong transcription	Placenta	Placenta
32	chr14:69890600-69895400	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr14:69890600-69896400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:69890600-69896600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr14:69890800-69893400	Strong transcription	NHEK	skin
36	chr14:69890800-69893600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr14:69890800-69893600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr14:69890800-69893600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:69890800-69893600	Strong transcription	Brain Hippocampus Middle	brain
40	chr14:69890800-69893600	Strong transcription	Fetal Lung	lung
41	chr14:69890800-69893600	Strong transcription	HMEC	breast
42	chr14:69890800-69894000	Strong transcription	Brain Angular Gyrus	brain
43	chr14:69890800-69894000	Strong transcription	Duodenum Smooth Muscle	Duodenum
44	chr14:69890800-69894000	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr14:69890800-69894000	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr14:69890800-69894200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:69890800-69894400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr14:69890800-69894400	Strong transcription	Ovary	ovary
49	chr14:69890800-69894600	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr14:69890800-69894600	Strong transcription	Primary monocytes fromperipheralblood	blood

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