Variant report

Variant	rs35910256
Chromosome Location	chr7:65852745-65852746
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:65850442..65853165-chr7:65885977..65887755,2	K562	blood:

Extended variants
information (count: 173 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:166)

rs_ID	r²[population]
rs12530506	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12530546	0.97[EUR][1000 genomes]
rs12530746	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12530947	1.00[EUR][1000 genomes]
rs12531900	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12532060	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532173	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532182	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532247	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532249	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532278	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532383	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12532423	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12532657	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532675	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12533387	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12533744	0.89[EUR][1000 genomes]
rs12533877	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12534039	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534109	0.89[EUR][1000 genomes]
rs12534249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534263	0.97[EUR][1000 genomes]
rs12534477	0.89[EUR][1000 genomes]
rs12534881	0.85[EUR][1000 genomes]
rs12534985	1.00[EUR][1000 genomes]
rs12535985	0.89[EUR][1000 genomes]
rs12536816	0.89[EUR][1000 genomes]
rs12536818	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12537037	1.00[EUR][1000 genomes]
rs12537039	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12537368	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537698	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537936	0.89[EUR][1000 genomes]
rs12538011	0.97[EUR][1000 genomes]
rs12538113	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12538147	0.89[EUR][1000 genomes]
rs12538379	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12538611	0.86[ASN][1000 genomes]
rs12538686	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12538961	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539116	1.00[EUR][1000 genomes]
rs12539696	0.95[EUR][1000 genomes]
rs12539749	1.00[EUR][1000 genomes]
rs12539795	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540455	1.00[EUR][1000 genomes]
rs12540667	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540888	0.89[EUR][1000 genomes]
rs1363056	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17228285	0.97[EUR][1000 genomes]
rs17294397	1.00[EUR][1000 genomes]
rs2075004	1.00[EUR][1000 genomes]
rs2292936	0.89[EUR][1000 genomes]
rs2292937	0.89[EUR][1000 genomes]
rs3735145	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3735146	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735150	1.00[EUR][1000 genomes]
rs3814466	1.00[EUR][1000 genomes]
rs3815684	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4149467	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4717301	1.00[EUR][1000 genomes]
rs4717305	1.00[EUR][1000 genomes]
rs4718342	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718345	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718347	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718350	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718353	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718354	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718368	1.00[EUR][1000 genomes]
rs4718372	0.97[EUR][1000 genomes]
rs4718376	1.00[EUR][1000 genomes]
rs4718379	1.00[EUR][1000 genomes]
rs4718380	1.00[EUR][1000 genomes]
rs62465362	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465364	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465367	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465372	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465373	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62465376	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465377	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465380	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465389	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465390	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465391	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465392	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465394	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465395	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465396	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465397	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465399	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62465400	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465401	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62465402	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465403	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465404	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465405	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465422	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465424	1.00[EUR][1000 genomes]
rs62465425	1.00[EUR][1000 genomes]
rs62465426	0.97[EUR][1000 genomes]
rs62465427	0.81[EUR][1000 genomes]
rs62465428	1.00[EUR][1000 genomes]
rs62465429	1.00[EUR][1000 genomes]
rs62465431	1.00[EUR][1000 genomes]
rs62465432	0.97[EUR][1000 genomes]
rs62465433	0.95[EUR][1000 genomes]
rs62465436	0.84[EUR][1000 genomes]
rs62465457	1.00[EUR][1000 genomes]
rs62465458	1.00[EUR][1000 genomes]
rs62465474	0.84[EUR][1000 genomes]
rs62465475	0.84[EUR][1000 genomes]
rs62465476	0.87[EUR][1000 genomes]
rs62465483	0.82[EUR][1000 genomes]
rs62465484	0.89[EUR][1000 genomes]
rs62465512	0.89[EUR][1000 genomes]
rs62465513	0.89[EUR][1000 genomes]
rs62465515	0.89[EUR][1000 genomes]
rs62465519	0.89[EUR][1000 genomes]
rs62465521	0.89[EUR][1000 genomes]
rs62465522	0.89[EUR][1000 genomes]
rs62465525	0.89[EUR][1000 genomes]
rs62465526	0.89[EUR][1000 genomes]
rs62465527	0.89[EUR][1000 genomes]
rs62465542	0.89[EUR][1000 genomes]
rs62465545	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62465546	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62465547	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62465550	0.87[AMR][1000 genomes]
rs62465552	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62465554	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62467760	0.97[EUR][1000 genomes]
rs62467762	1.00[EUR][1000 genomes]
rs62467763	1.00[EUR][1000 genomes]
rs62467764	1.00[EUR][1000 genomes]
rs62467765	1.00[EUR][1000 genomes]
rs62467766	1.00[EUR][1000 genomes]
rs62467767	0.92[EUR][1000 genomes]
rs62467768	0.95[EUR][1000 genomes]
rs62467769	1.00[EUR][1000 genomes]
rs62467770	1.00[EUR][1000 genomes]
rs62467771	0.97[EUR][1000 genomes]
rs62467801	0.97[EUR][1000 genomes]
rs62467802	1.00[EUR][1000 genomes]
rs62467804	1.00[EUR][1000 genomes]
rs62467805	1.00[EUR][1000 genomes]
rs62467811	1.00[EUR][1000 genomes]
rs62467814	1.00[EUR][1000 genomes]
rs62468669	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468673	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468674	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468677	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62468679	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468696	1.00[EUR][1000 genomes]
rs62468699	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468700	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468702	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468705	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468707	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468708	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468709	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62468710	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs62468711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468712	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7384751	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv970513	chr7:65842694-65860742	Enhancers ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv981506	chr7:65842694-65876873	Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35910256	RABGEF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65840000-65878400	Weak transcription	Psoas Muscle	Psoas
2	chr7:65840400-65873400	Weak transcription	K562	blood
3	chr7:65840600-65858400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:65841400-65875400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr7:65842400-65867800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr7:65843400-65877600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr7:65843600-65878200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:65844000-65878400	Weak transcription	Thymus	Thymus
9	chr7:65844600-65860400	Weak transcription	Esophagus	oesophagus
10	chr7:65845000-65856000	Weak transcription	Right Atrium	heart
11	chr7:65845000-65866800	Weak transcription	Brain Anterior Caudate	brain
12	chr7:65845000-65867200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:65845000-65867200	Weak transcription	Spleen	Spleen
14	chr7:65845000-65873000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr7:65845000-65873600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr7:65845000-65878000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:65845000-65878000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr7:65845000-65878200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:65845000-65878200	Weak transcription	Right Ventricle	heart
20	chr7:65845000-65878400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr7:65845000-65878400	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:65845000-65878400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr7:65845200-65856200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr7:65845200-65867200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr7:65845200-65873400	Weak transcription	HepG2	liver
26	chr7:65845200-65878200	Weak transcription	Left Ventricle	heart
27	chr7:65845200-65878600	Weak transcription	Aorta	Aorta
28	chr7:65845400-65853600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:65845400-65854200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:65845400-65856400	Weak transcription	Fetal Intestine Large	intestine
31	chr7:65845400-65860400	Weak transcription	Osteobl	bone
32	chr7:65845400-65863400	Weak transcription	Brain Angular Gyrus	brain
33	chr7:65845400-65864200	Weak transcription	Primary T cells from cord blood	blood
34	chr7:65845400-65865600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:65845400-65866600	Weak transcription	Adipose Nuclei	Adipose
36	chr7:65845400-65875400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr7:65845400-65877200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr7:65845400-65878000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:65845400-65878200	Weak transcription	Brain Germinal Matrix	brain
40	chr7:65845400-65878200	Weak transcription	Pancreas	Pancrea
41	chr7:65845600-65855800	Weak transcription	Fetal Intestine Small	intestine
42	chr7:65845600-65857200	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr7:65845600-65860400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:65845600-65864000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr7:65845600-65864000	Weak transcription	Brain Substantia Nigra	brain
46	chr7:65845600-65864000	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr7:65845600-65864200	Weak transcription	Fetal Brain Female	brain
48	chr7:65845600-65864600	Weak transcription	Brain Hippocampus Middle	brain
49	chr7:65845600-65865400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr7:65845600-65866800	Weak transcription	Primary B cells from cord blood	blood

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