Variant report

Variant	rs62465404
Chromosome Location	chr7:65956413-65956414
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:65955564-65956622	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr7:65956396-65956609	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr7:65955678-65956594	H1-hESC	embryonic stem cell:	n/a	n/a
4	POLR2A	chr7:65956217-65956516	HepG2	liver:	n/a	n/a
5	POLR2A	chr7:65955495-65959617	H1-hESC	embryonic stem cell:	n/a	n/a
6	TAF1	chr7:65955658-65956960	H1-hESC	embryonic stem cell:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SBDS-5	chr7:65956083-65956458	ENSG00000223473
2	lnc-SBDS-5	chr7:65956408-65958553	NONHSAT121189

Variant related genes	Relation type
ENSG00000244657	TF binding region
ENSG00000244510	TF binding region
ENSG00000230189	TF binding region
ENSG00000237310	TF binding region

Extended variants
information (count: 213 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:201)

rs_ID	r²[population]
rs12530506	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12530546	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12530746	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12530947	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12531690	0.97[EUR][1000 genomes]
rs12531758	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12531900	0.89[EUR][1000 genomes]
rs12532060	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532247	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532249	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532267	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12532278	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532383	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12532423	0.89[EUR][1000 genomes]
rs12532657	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533387	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533744	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12533877	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12533963	0.95[EUR][1000 genomes]
rs12534039	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534192	0.92[EUR][1000 genomes]
rs12534249	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534263	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12534355	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs12534391	1.00[EUR][1000 genomes]
rs12534435	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12534985	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535363	1.00[EUR][1000 genomes]
rs12535400	0.81[AMR][1000 genomes]
rs12535756	1.00[EUR][1000 genomes]
rs12535766	1.00[EUR][1000 genomes]
rs12536586	1.00[EUR][1000 genomes]
rs12536818	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537037	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12537039	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12537368	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537545	1.00[EUR][1000 genomes]
rs12537698	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12538011	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538113	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538379	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12538611	0.92[ASN][1000 genomes]
rs12538686	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12538961	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539116	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12539696	0.95[EUR][1000 genomes]
rs12539749	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12539795	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540455	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12540667	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363056	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17228285	0.97[EUR][1000 genomes]
rs17228728	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17229513	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17229674	1.00[EUR][1000 genomes]
rs17230057	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17294397	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2075004	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2286682	1.00[EUR][1000 genomes]
rs2286685	0.97[EUR][1000 genomes]
rs2286686	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35910256	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3735145	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735146	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3735150	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3814466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3815684	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4078168	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4149467	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4276561	1.00[EUR][1000 genomes]
rs4717291	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717301	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4717305	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4717309	1.00[EUR][1000 genomes]
rs4717311	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4717312	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4717313	1.00[EUR][1000 genomes]
rs4718342	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718345	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718347	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718350	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718353	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718354	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718368	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4718372	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs4718376	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4718379	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4718380	1.00[EUR][1000 genomes]
rs4718381	0.95[EUR][1000 genomes]
rs4718382	1.00[EUR][1000 genomes]
rs62465362	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465363	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465364	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465365	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465367	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465372	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62465373	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465376	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465377	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465380	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62465389	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465390	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465391	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465392	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62465394	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465395	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465396	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465397	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465399	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465400	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465401	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465405	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465422	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465424	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465425	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465426	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465427	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62465428	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465429	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465431	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465432	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465433	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62465436	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62465457	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465458	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62466081	1.00[EUR][1000 genomes]
rs62466083	1.00[EUR][1000 genomes]
rs62466084	1.00[EUR][1000 genomes]
rs62466085	1.00[EUR][1000 genomes]
rs62466086	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466087	1.00[EUR][1000 genomes]
rs62466090	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466091	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466122	1.00[EUR][1000 genomes]
rs62466123	1.00[EUR][1000 genomes]
rs62466125	0.95[EUR][1000 genomes]
rs62466126	1.00[EUR][1000 genomes]
rs62466127	1.00[EUR][1000 genomes]
rs62466128	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466133	1.00[EUR][1000 genomes]
rs62466134	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466136	1.00[EUR][1000 genomes]
rs62466137	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466138	1.00[EUR][1000 genomes]
rs62466139	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62466140	0.88[EUR][1000 genomes]
rs62466141	0.95[EUR][1000 genomes]
rs62466142	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62466143	0.97[EUR][1000 genomes]
rs62466144	1.00[EUR][1000 genomes]
rs62467760	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62467762	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467763	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467764	1.00[EUR][1000 genomes]
rs62467765	1.00[EUR][1000 genomes]
rs62467766	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467767	0.92[EUR][1000 genomes]
rs62467768	0.95[EUR][1000 genomes]
rs62467769	1.00[EUR][1000 genomes]
rs62467770	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467771	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62467801	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62467802	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467804	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467805	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467811	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467814	1.00[EUR][1000 genomes]
rs62467816	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62467856	0.97[EUR][1000 genomes]
rs62468669	0.92[EUR][1000 genomes]
rs62468673	0.95[EUR][1000 genomes]
rs62468674	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468677	1.00[EUR][1000 genomes]
rs62468679	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468696	1.00[EUR][1000 genomes]
rs62468699	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62468700	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62468702	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468705	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468707	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468708	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468709	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62468710	0.81[ASN][1000 genomes]
rs62468711	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62468712	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469060	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62469061	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62469062	1.00[EUR][1000 genomes]
rs62469064	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62469066	1.00[EUR][1000 genomes]
rs62469067	1.00[EUR][1000 genomes]
rs62469069	1.00[EUR][1000 genomes]
rs62469070	1.00[EUR][1000 genomes]
rs62469072	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs7384751	1.00[EUR][1000 genomes]
rs9801144	0.89[EUR][1000 genomes]
rs9801269	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv1035107	chr7:65814901-66114919	Genic enhancers Strong transcription ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv538909	chr7:65814901-66114919	Strong transcription Weak transcription Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
5	nsv888326	chr7:65825257-66066999	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv482441	chr7:65885824-66061788	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
7	nsv1027068	chr7:65901543-65991211	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	esv3447484	chr7:65909457-66033145	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
9	esv3377926	chr7:65934493-66051484	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
10	nsv888327	chr7:65938980-66029429	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
11	esv3423847	chr7:65941210-66054107	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
12	nsv981508	chr7:65941357-65958736	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62465404	RABGEF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:65879200-65957600	Weak transcription	Psoas Muscle	Psoas
2	chr7:65905600-65957600	Weak transcription	Fetal Lung	lung
3	chr7:65911400-65957800	Weak transcription	Aorta	Aorta
4	chr7:65917000-65957800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr7:65925000-65957200	Weak transcription	Dnd41	blood
6	chr7:65925000-65957600	Weak transcription	Left Ventricle	heart
7	chr7:65925400-65957200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr7:65927600-65957600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr7:65931200-65957600	Weak transcription	Right Ventricle	heart
10	chr7:65931400-65957800	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:65935800-65957600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr7:65937200-65957200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr7:65937200-65957200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:65937200-65957600	Weak transcription	HSMMtube	muscle
15	chr7:65937400-65957200	Weak transcription	Right Atrium	heart
16	chr7:65937600-65958000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr7:65937800-65956600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:65937800-65957600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:65937800-65957800	Weak transcription	Fetal Kidney	kidney
20	chr7:65937800-65957800	Weak transcription	Small Intestine	intestine
21	chr7:65938200-65957600	Weak transcription	HSMM	muscle
22	chr7:65938800-65957600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:65939200-65957600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr7:65939400-65957600	Weak transcription	Brain Germinal Matrix	brain
25	chr7:65940200-65957200	Weak transcription	Brain Substantia Nigra	brain
26	chr7:65940400-65957600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr7:65940600-65957400	Weak transcription	Pancreas	Pancrea
28	chr7:65940600-65957600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr7:65940800-65957200	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr7:65940800-65957600	Weak transcription	Brain Hippocampus Middle	brain
31	chr7:65940800-65957600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr7:65941000-65957200	Weak transcription	Gastric	stomach
33	chr7:65941000-65957400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr7:65941000-65957600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:65941000-65957600	Weak transcription	Spleen	Spleen
36	chr7:65941400-65957600	Weak transcription	Colon Smooth Muscle	Colon
37	chr7:65941600-65957600	Weak transcription	Duodenum Mucosa	Duodenum
38	chr7:65942800-65957600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr7:65943400-65957400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr7:65943400-65957600	Weak transcription	GM12878-XiMat	blood
41	chr7:65943600-65957600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr7:65943800-65957400	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:65944000-65957600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr7:65944200-65957400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr7:65944200-65957400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr7:65944200-65957600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr7:65944200-65957600	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr7:65944200-65957800	Weak transcription	Primary T helper cells PMA-I stimulated	--
49	chr7:65944400-65957600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr7:65944400-65957600	Weak transcription	Primary B cells from cord blood	blood

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