Variant report

Variant	rs62466123
Chromosome Location	chr7:66146236-66146237
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:21)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:21 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr7:66146015-66148114	GM12878	blood:	n/a	n/a
2	CEBPB	chr7:66145948-66146273	K562	blood:	n/a	n/a
3	POLR2A	chr7:66146078-66147376	GM12891	blood:	n/a	n/a
4	MTA3	chr7:66146051-66147529	GM12878	blood:	n/a	n/a
5	CBX3	chr7:66146127-66148017	K562	blood:	n/a	n/a
6	FOXA1	chr7:66146062-66146386	HepG2	liver:	n/a	chr7:66146296-66146308
7	POLR2A	chr7:66146085-66146358	GM12878	blood:	n/a	n/a
8	GTF3C2	chr7:66146088-66147787	K562	blood:	n/a	n/a
9	MXI1	chr7:66145839-66148202	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr7:66146195-66146257	HUVEC	blood vessel:	n/a	n/a
11	POLR2A	chr7:66145967-66146380	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr7:66146060-66148035	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chr7:66145917-66146277	K562	blood:	n/a	n/a
14	POLR2A	chr7:66146060-66146402	MCF10A-Er-Src	breast:	n/a	n/a
15	CHD1	chr7:66146109-66149232	IMR90	lung:	n/a	n/a
16	POLR2A	chr7:66145544-66148515	IMR90	lung:	n/a	n/a
17	POLR2A	chr7:66146158-66148127	HepG2	liver:	n/a	n/a
18	SMARCC1	chr7:66146006-66148129	Hela-S3	cervix:	n/a	n/a
19	POLR2A	chr7:66146058-66147643	K562	blood:	n/a	n/a
20	POLR2A	chr7:66146059-66147728	PANC-1	pancreas:	n/a	n/a
21	BACH1	chr7:66146150-66146295	H1-hESC	embryonic stem cell:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:66144088..66147004-chr7:66459962..66461648,2	MCF-7	breast:
2	chr7:66145930..66148922-chr7:66213233..66215140,2	MCF-7	breast:
3	chr7:66118152..66121117-chr7:66145225..66147766,4	MCF-7	breast:
4	chr7:66145800..66148420-chr7:66309175..66311369,3	MCF-7	breast:
5	chr7:66121223..66123141-chr7:66144196..66146928,3	MCF-7	breast:
6	chr7:66144717..66148625-chr7:66203954..66207507,5	K562	blood:
7	chr7:66145819..66148736-chr7:66203770..66205462,3	MCF-7	breast:
8	chr7:66119490..66121348-chr7:66145844..66148158,2	K562	blood:
9	chr7:66144687..66148625-chr7:66203954..66207507,6	K562	blood:
10	chr7:66056772..66058576-chr7:66145183..66146865,2	MCF-7	breast:

No data

Variant related genes	Relation type
RABGEF1	TF binding region
ENSG00000154710	Chromatin interaction
ENSG00000243335	Chromatin interaction
ENSG00000198874	Chromatin interaction
ENSG00000226824	Chromatin interaction
ENSG00000126524	Chromatin interaction
ENSG00000272831	Chromatin interaction
ENSG00000230583	Chromatin interaction
ENSG00000271064	Chromatin interaction
ENSG00000232559	Chromatin interaction

Extended variants
information (count: 268 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:265)

rs_ID	r²[population]
rs10499785	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12530546	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12530947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531374	0.95[EUR][1000 genomes]
rs12531377	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531402	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531758	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532147	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532173	1.00[EUR][1000 genomes]
rs12532182	1.00[EUR][1000 genomes]
rs12532267	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532650	0.81[EUR][1000 genomes]
rs12532888	0.84[ASN][1000 genomes]
rs12533018	0.95[EUR][1000 genomes]
rs12533744	0.89[EUR][1000 genomes]
rs12533877	1.00[EUR][1000 genomes]
rs12533886	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12533958	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12533963	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534192	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12534263	0.97[EUR][1000 genomes]
rs12534355	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12534391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535268	0.89[EUR][1000 genomes]
rs12535321	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12535363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12535756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12535766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12536130	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12536586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12536818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537037	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12537346	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12538011	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12538113	1.00[EUR][1000 genomes]
rs12538126	0.89[EUR][1000 genomes]
rs12538131	0.84[EUR][1000 genomes]
rs12538686	0.92[EUR][1000 genomes]
rs12539116	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539522	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539696	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539749	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539795	1.00[EUR][1000 genomes]
rs12539848	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12540312	0.89[EUR][1000 genomes]
rs12540447	0.89[EUR][1000 genomes]
rs12540455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12540536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17228285	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17228728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17229513	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17229674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17230057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17294397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2075004	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2279934	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2279935	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286685	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2286686	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28431850	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35279320	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3735146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735150	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735152	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3735153	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3757420	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3778906	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3778911	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800811	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800813	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3814466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823608	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4078168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4276561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717301	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4717305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717309	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4717311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717312	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4717313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717318	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717320	0.95[EUR][1000 genomes]
rs4717323	0.92[EUR][1000 genomes]
rs4717324	0.92[EUR][1000 genomes]
rs4717329	0.84[EUR][1000 genomes]
rs4718353	0.97[EUR][1000 genomes]
rs4718354	1.00[EUR][1000 genomes]
rs4718368	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4718372	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718376	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718379	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718380	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718381	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718393	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718394	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718395	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718396	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718397	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718398	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718402	0.95[EUR][1000 genomes]
rs4718407	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718409	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464646	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464647	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464648	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464651	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464652	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464653	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464654	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464655	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464658	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62464659	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465399	0.92[EUR][1000 genomes]
rs62465400	1.00[EUR][1000 genomes]
rs62465401	1.00[EUR][1000 genomes]
rs62465402	0.97[EUR][1000 genomes]
rs62465403	0.95[EUR][1000 genomes]
rs62465404	1.00[EUR][1000 genomes]
rs62465405	0.92[EUR][1000 genomes]
rs62465422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465424	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465425	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465426	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465427	0.81[EUR][1000 genomes]
rs62465428	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465429	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465431	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465432	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465433	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62465436	0.84[EUR][1000 genomes]
rs62465457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465458	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465661	0.92[EUR][1000 genomes]
rs62465676	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465678	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465681	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465682	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465688	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465698	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465700	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465701	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62465705	0.92[EUR][1000 genomes]
rs62465706	0.95[EUR][1000 genomes]
rs62465707	0.95[EUR][1000 genomes]
rs62465709	0.95[EUR][1000 genomes]
rs62465710	0.89[EUR][1000 genomes]
rs62465712	0.89[EUR][1000 genomes]
rs62465713	0.89[EUR][1000 genomes]
rs62465714	0.89[EUR][1000 genomes]
rs62465716	0.89[EUR][1000 genomes]
rs62465730	0.89[EUR][1000 genomes]
rs62465734	0.89[EUR][1000 genomes]
rs62465736	0.84[EUR][1000 genomes]
rs62465738	0.84[EUR][1000 genomes]
rs62465739	0.84[EUR][1000 genomes]
rs62465740	0.84[EUR][1000 genomes]
rs62465741	0.84[EUR][1000 genomes]
rs62465742	0.84[EUR][1000 genomes]
rs62465743	0.84[EUR][1000 genomes]
rs62465744	0.84[EUR][1000 genomes]
rs62465745	0.84[EUR][1000 genomes]
rs62466081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466090	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466091	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466128	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62466138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466139	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466140	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466141	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466142	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466143	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466148	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466792	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62466797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466799	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466803	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466805	0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466806	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466808	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466847	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466848	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466849	0.90[ASN][1000 genomes]
rs62466850	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466851	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466852	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466855	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466856	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62466857	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466858	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466859	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467760	0.97[EUR][1000 genomes]
rs62467762	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467763	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467766	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467767	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62467768	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467771	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467801	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467804	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467805	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467811	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467816	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62467856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468260	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468261	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468262	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468263	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62469060	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469061	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469064	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469069	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62469070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469072	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7384751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7781008	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7782418	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9801144	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9801269	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	nsv981398	chr7:66138644-66147890	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62466123	RABGEF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66128000-66146400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:66134400-66146400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr7:66135200-66146400	Weak transcription	Lung	lung
4	chr7:66135200-66146400	Weak transcription	Ovary	ovary
5	chr7:66135400-66146400	Weak transcription	Esophagus	oesophagus
6	chr7:66136600-66146400	Weak transcription	Fetal Stomach	stomach
7	chr7:66145000-66146400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr7:66145800-66146400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:66145800-66146400	Enhancers	Fetal Muscle Trunk	muscle
10	chr7:66145800-66146400	Enhancers	Placenta	Placenta
11	chr7:66146000-66146400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:66146000-66146400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:66146000-66146400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr7:66146000-66146400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:66146000-66146400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
16	chr7:66146000-66146400	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr7:66146000-66146400	Weak transcription	Left Ventricle	heart
18	chr7:66146000-66146400	Enhancers	Pancreas	Pancrea
19	chr7:66146000-66146400	Enhancers	Small Intestine	intestine
20	chr7:66146000-66146400	Enhancers	Spleen	Spleen
21	chr7:66146000-66146400	Flanking Active TSS	A549	lung
22	chr7:66146000-66146400	Flanking Active TSS	HepG2	liver
23	chr7:66146000-66146400	Flanking Active TSS	K562	blood
24	chr7:66146000-66146600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr7:66146000-66146600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:66146000-66146600	Flanking Active TSS	Primary T cells from cord blood	blood
27	chr7:66146000-66146600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr7:66146000-66146600	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr7:66146000-66146600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr7:66146000-66146600	Flanking Active TSS	Brain Angular Gyrus	brain
31	chr7:66146000-66146600	Flanking Active TSS	Brain Anterior Caudate	brain
32	chr7:66146000-66146600	Flanking Active TSS	Brain Cingulate Gyrus	brain
33	chr7:66146000-66146600	Flanking Active TSS	Duodenum Mucosa	Duodenum
34	chr7:66146000-66146600	Flanking Active TSS	Dnd41	blood
35	chr7:66146000-66146600	Flanking Active TSS	Hela-S3	cervix
36	chr7:66146000-66146600	Flanking Active TSS	HMEC	breast
37	chr7:66146000-66146600	Flanking Active TSS	NHEK	skin
38	chr7:66146000-66146800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
39	chr7:66146000-66146800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
40	chr7:66146000-66146800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr7:66146000-66146800	Flanking Active TSS	Osteobl	bone
42	chr7:66146000-66147000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
43	chr7:66146000-66147000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr7:66146000-66147400	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr7:66146000-66147600	Active TSS	Stomach Smooth Muscle	stomach
46	chr7:66146000-66147800	Active TSS	HUES64 Cell Line	embryonic stem cell
47	chr7:66146000-66147800	Active TSS	Rectal Mucosa Donor 29	rectum
48	chr7:66146000-66148200	Active TSS	iPS-15b Cell Line	embryonic stem cell
49	chr7:66146000-66148400	Active TSS	HUES6 Cell Line	embryonic stem cell
50	chr7:66146000-66148400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin

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Variant report

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