Variant report

Variant	rs62465681
Chromosome Location	chr7:66284447-66284448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 214 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:210)

rs_ID	r²[population]
rs10499785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531377	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531402	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531516	0.85[ASN][1000 genomes]
rs12531690	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531758	0.95[EUR][1000 genomes]
rs12532147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12532267	0.95[EUR][1000 genomes]
rs12532650	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12532888	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12533018	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12533886	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533958	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533963	0.90[EUR][1000 genomes]
rs12534192	0.87[EUR][1000 genomes]
rs12534355	0.81[EUR][1000 genomes]
rs12534391	0.95[EUR][1000 genomes]
rs12534435	0.95[EUR][1000 genomes]
rs12535268	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12535321	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12535363	0.95[EUR][1000 genomes]
rs12535756	0.95[EUR][1000 genomes]
rs12535766	0.95[EUR][1000 genomes]
rs12536130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536586	0.95[EUR][1000 genomes]
rs12537346	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537403	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537545	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12537771	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537825	0.82[ASN][1000 genomes]
rs12538126	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12538131	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539191	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539366	0.85[ASN][1000 genomes]
rs12539522	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539848	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12540312	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540447	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540455	0.95[EUR][1000 genomes]
rs12540536	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17228728	0.95[EUR][1000 genomes]
rs17229513	0.95[EUR][1000 genomes]
rs17229674	0.95[EUR][1000 genomes]
rs17230057	0.95[EUR][1000 genomes]
rs17294397	0.95[EUR][1000 genomes]
rs2091314	0.85[ASN][1000 genomes]
rs2279934	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2279935	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286682	0.95[EUR][1000 genomes]
rs2286685	0.92[EUR][1000 genomes]
rs2286686	0.95[EUR][1000 genomes]
rs2293351	0.85[ASN][1000 genomes]
rs28431850	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34758320	0.85[ASN][1000 genomes]
rs35279320	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735152	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735153	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778906	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778911	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3800811	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800813	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800819	0.85[ASN][1000 genomes]
rs3823608	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4078168	0.95[EUR][1000 genomes]
rs4276561	0.95[EUR][1000 genomes]
rs4717309	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717311	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4717312	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717313	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717314	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717316	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717318	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717320	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717323	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717324	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718381	0.89[EUR][1000 genomes]
rs4718382	0.95[EUR][1000 genomes]
rs4718390	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718391	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718392	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718393	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718394	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718395	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718396	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718397	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718398	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718402	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718407	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718409	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464646	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464647	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464648	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464651	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464653	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464655	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464658	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62464659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465661	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62465676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465678	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465682	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465688	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465698	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465699	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62465700	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465701	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62465705	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465706	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465707	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465709	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465710	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465712	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465713	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465714	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465716	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465730	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465734	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465736	0.85[ASN][1000 genomes]
rs62465738	0.85[ASN][1000 genomes]
rs62465739	0.85[ASN][1000 genomes]
rs62465740	0.85[ASN][1000 genomes]
rs62465741	0.85[ASN][1000 genomes]
rs62465742	0.85[ASN][1000 genomes]
rs62465743	0.85[ASN][1000 genomes]
rs62465744	0.85[ASN][1000 genomes]
rs62465745	0.85[ASN][1000 genomes]
rs62465747	0.85[ASN][1000 genomes]
rs62465748	0.85[ASN][1000 genomes]
rs62466081	0.95[EUR][1000 genomes]
rs62466083	0.95[EUR][1000 genomes]
rs62466084	0.95[EUR][1000 genomes]
rs62466085	0.95[EUR][1000 genomes]
rs62466086	0.95[EUR][1000 genomes]
rs62466087	0.95[EUR][1000 genomes]
rs62466090	0.95[EUR][1000 genomes]
rs62466091	0.95[EUR][1000 genomes]
rs62466122	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466123	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466125	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466126	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466127	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466128	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466133	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466134	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466136	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466137	0.95[EUR][1000 genomes]
rs62466138	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466139	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466140	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466141	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466142	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466143	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466144	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466145	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466146	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466147	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466148	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466582	0.85[ASN][1000 genomes]
rs62466584	0.85[ASN][1000 genomes]
rs62466586	0.82[ASN][1000 genomes]
rs62466787	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466788	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466789	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466792	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466795	0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62466797	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466798	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466799	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466801	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466802	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466803	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466805	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466808	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466847	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466849	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62466850	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466851	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466855	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466856	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62466857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466859	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467811	0.95[EUR][1000 genomes]
rs62467814	0.95[EUR][1000 genomes]
rs62467816	0.95[EUR][1000 genomes]
rs62467856	0.92[EUR][1000 genomes]
rs62468260	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468262	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469060	0.95[EUR][1000 genomes]
rs62469061	0.95[EUR][1000 genomes]
rs62469062	0.95[EUR][1000 genomes]
rs62469064	0.95[EUR][1000 genomes]
rs62469066	0.95[EUR][1000 genomes]
rs62469067	0.95[EUR][1000 genomes]
rs62469069	0.95[EUR][1000 genomes]
rs62469070	0.95[EUR][1000 genomes]
rs62469072	0.92[EUR][1000 genomes]
rs7384751	0.95[EUR][1000 genomes]
rs7781008	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9801144	0.84[EUR][1000 genomes]
rs9801269	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv888329	chr7:66234585-66376095	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv981513	chr7:66276464-66291614	Weak transcription Enhancers Strong transcription Genic enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66276800-66284800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr7:66277800-66284800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr7:66277800-66288600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:66278800-66284800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links