Variant report

Variant	rs62466091
Chromosome Location	chr7:66130939-66130940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66118854..66122954-chr7:66127904..66133734,8	K562	blood:
2	chr7:66117974..66122051-chr7:66130047..66133734,5	K562	blood:
3	chr7:66130351..66133208-chr7:66135142..66136772,2	K562	blood:
4	chr6:27100755..27103538-chr7:66129131..66132077,2	K562	blood:

Variant related genes	Relation type
ENSG00000196787	Chromatin interaction
ENSG00000226824	Chromatin interaction

Extended variants
information (count: 271 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:261)

rs_ID	r²[population]
rs10499785	0.95[EUR][1000 genomes]
rs12530546	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12530947	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531374	0.95[EUR][1000 genomes]
rs12531377	0.95[EUR][1000 genomes]
rs12531402	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531690	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532147	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12532173	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12532182	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12532267	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532383	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12532650	0.81[EUR][1000 genomes]
rs12533018	0.95[EUR][1000 genomes]
rs12533744	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12533877	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12533886	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533958	0.95[EUR][1000 genomes]
rs12533963	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534192	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534263	0.97[EUR][1000 genomes]
rs12534355	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12534391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534435	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534985	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535268	0.89[EUR][1000 genomes]
rs12535321	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12535363	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535756	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535766	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12536130	0.95[EUR][1000 genomes]
rs12536586	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536818	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537346	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537403	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537545	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537771	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12538011	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12538113	1.00[EUR][1000 genomes]
rs12538126	0.89[EUR][1000 genomes]
rs12538131	0.84[EUR][1000 genomes]
rs12538686	0.92[EUR][1000 genomes]
rs12539116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539191	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539522	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539696	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539795	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12539848	0.95[EUR][1000 genomes]
rs12540312	0.89[EUR][1000 genomes]
rs12540447	0.89[EUR][1000 genomes]
rs12540455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540536	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17228285	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17228728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229674	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230057	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2075004	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2279934	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2279935	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286682	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286685	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286686	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431850	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35279320	0.90[EUR][1000 genomes]
rs3735146	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735150	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735152	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735153	0.95[EUR][1000 genomes]
rs3757420	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778906	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778911	0.95[EUR][1000 genomes]
rs3800811	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800813	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814466	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823608	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4078168	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276561	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717301	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4717305	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717309	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717313	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717314	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717316	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717318	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717320	0.95[EUR][1000 genomes]
rs4717323	0.92[EUR][1000 genomes]
rs4717324	0.92[EUR][1000 genomes]
rs4717329	0.84[EUR][1000 genomes]
rs4718353	0.97[EUR][1000 genomes]
rs4718354	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4718368	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4718372	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718376	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718380	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718381	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718382	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718390	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718391	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718392	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718393	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718394	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718395	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718396	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718397	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718398	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718402	0.95[EUR][1000 genomes]
rs4718407	0.95[EUR][1000 genomes]
rs4718409	0.95[EUR][1000 genomes]
rs62464646	0.95[EUR][1000 genomes]
rs62464647	0.95[EUR][1000 genomes]
rs62464648	0.95[EUR][1000 genomes]
rs62464651	0.95[EUR][1000 genomes]
rs62464652	0.95[EUR][1000 genomes]
rs62464653	0.95[EUR][1000 genomes]
rs62464654	0.95[EUR][1000 genomes]
rs62464655	0.95[EUR][1000 genomes]
rs62464658	0.95[EUR][1000 genomes]
rs62464659	0.90[EUR][1000 genomes]
rs62465394	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465395	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465396	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465397	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465399	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62465400	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465401	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465402	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs62465403	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs62465404	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs62465405	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62465422	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465424	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465425	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465426	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465427	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs62465428	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465429	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465431	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465432	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465433	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62465436	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62465457	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465458	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465661	0.92[EUR][1000 genomes]
rs62465676	0.92[EUR][1000 genomes]
rs62465678	0.95[EUR][1000 genomes]
rs62465681	0.95[EUR][1000 genomes]
rs62465682	0.95[EUR][1000 genomes]
rs62465688	0.92[EUR][1000 genomes]
rs62465698	0.92[EUR][1000 genomes]
rs62465700	0.92[EUR][1000 genomes]
rs62465701	0.92[EUR][1000 genomes]
rs62465705	0.92[EUR][1000 genomes]
rs62465706	0.95[EUR][1000 genomes]
rs62465707	0.95[EUR][1000 genomes]
rs62465709	0.95[EUR][1000 genomes]
rs62465710	0.89[EUR][1000 genomes]
rs62465712	0.89[EUR][1000 genomes]
rs62465713	0.89[EUR][1000 genomes]
rs62465714	0.89[EUR][1000 genomes]
rs62465716	0.89[EUR][1000 genomes]
rs62465730	0.89[EUR][1000 genomes]
rs62465734	0.89[EUR][1000 genomes]
rs62465736	0.84[EUR][1000 genomes]
rs62466081	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466083	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466084	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466085	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466086	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466087	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466122	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466123	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466125	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466126	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466127	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466133	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466137	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62466138	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466139	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466140	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466141	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466142	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466143	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466144	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466145	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466146	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466147	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466148	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466787	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466788	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466789	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466792	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466795	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62466797	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466798	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466799	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466801	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466803	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466805	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466806	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466808	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466847	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466848	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466849	0.85[ASN][1000 genomes]
rs62466850	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466851	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466852	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466855	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466856	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62466857	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466858	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466859	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467760	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62467762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467763	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467764	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467765	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467767	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62467768	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467769	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467770	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467801	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467805	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467814	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62467856	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468260	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468261	0.95[EUR][1000 genomes]
rs62468262	0.95[EUR][1000 genomes]
rs62468263	0.95[EUR][1000 genomes]
rs62469060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469061	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469062	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469066	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469067	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469069	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62469070	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7384751	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781008	0.92[EUR][1000 genomes]
rs7782418	0.90[ASN][1000 genomes]
rs9801144	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9801269	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv2761151	chr7:66095738-66138285	Flanking Active TSS Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3496297	chr7:66099491-66136579	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3496298	chr7:66099491-66136579	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv3486481	chr7:66101377-66137773	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv3486482	chr7:66101377-66137773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv3509629	chr7:66101713-66137585	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv3509631	chr7:66101713-66137585	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv967445	chr7:66112743-66133589	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62466091	RABGEF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66120600-66132400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr7:66120600-66146000	Weak transcription	Primary T cells from cord blood	blood
3	chr7:66120600-66146200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr7:66120800-66132000	Weak transcription	Fetal Brain Female	brain
5	chr7:66120800-66143600	Weak transcription	GM12878-XiMat	blood
6	chr7:66120800-66146000	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr7:66121000-66139400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr7:66121000-66143600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr7:66121000-66144000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr7:66121000-66146200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:66121000-66146200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr7:66121200-66131400	Weak transcription	Brain Angular Gyrus	brain
13	chr7:66121200-66137800	Weak transcription	HMEC	breast
14	chr7:66121400-66139800	Weak transcription	Rectal Smooth Muscle	rectum
15	chr7:66121400-66146000	Weak transcription	Adipose Nuclei	Adipose
16	chr7:66121400-66146000	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr7:66121600-66131800	Weak transcription	Right Ventricle	heart
18	chr7:66121600-66132600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr7:66121600-66133200	Weak transcription	Osteobl	bone
20	chr7:66121600-66133400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr7:66121600-66133400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:66121600-66133400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:66121600-66133400	Weak transcription	NHEK	skin
24	chr7:66121600-66133400	Weak transcription	NHLF	lung
25	chr7:66121600-66137800	Weak transcription	NH-A	brain
26	chr7:66121600-66144000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:66121600-66145400	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr7:66121600-66146200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:66121600-66146200	Weak transcription	HSMMtube	muscle
30	chr7:66121800-66134600	Weak transcription	Ovary	ovary
31	chr7:66121800-66144000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr7:66122200-66138200	Weak transcription	NHDF-Ad	bronchial
33	chr7:66122400-66133400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr7:66122400-66134400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr7:66122600-66146000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:66127800-66132600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr7:66127800-66135800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr7:66127800-66136800	Weak transcription	Hela-S3	cervix
39	chr7:66127800-66146000	Weak transcription	A549	lung
40	chr7:66128000-66131000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:66128000-66132000	Weak transcription	Fetal Muscle Leg	muscle
42	chr7:66128000-66132400	Weak transcription	Placenta	Placenta
43	chr7:66128000-66133200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr7:66128000-66133200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr7:66128000-66133200	Weak transcription	HepG2	liver
46	chr7:66128000-66133400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr7:66128000-66133400	Weak transcription	Esophagus	oesophagus
48	chr7:66128000-66133400	Weak transcription	Gastric	stomach
49	chr7:66128000-66133400	Weak transcription	Dnd41	blood
50	chr7:66128000-66135800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links