Variant report

Variant	rs12538131
Chromosome Location	chr7:66307853-66307854
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66307509..66310194-chr7:66460135..66463061,3	K562	blood:
2	chr7:66302070..66304968-chr7:66306621..66309380,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126524	Chromatin interaction
ENSG00000198874	Chromatin interaction

Extended variants
information (count: 175 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:172)

rs_ID	r²[population]
rs10499785	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531374	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531377	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531402	0.89[EUR][1000 genomes]
rs12531690	0.82[EUR][1000 genomes]
rs12531758	0.84[EUR][1000 genomes]
rs12532147	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12532267	0.84[EUR][1000 genomes]
rs12532650	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12532888	0.89[ASN][1000 genomes]
rs12533018	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12533886	0.80[EUR][1000 genomes]
rs12533958	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533963	0.80[EUR][1000 genomes]
rs12534391	0.84[EUR][1000 genomes]
rs12534435	0.84[EUR][1000 genomes]
rs12535268	0.93[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12535321	0.89[EUR][1000 genomes]
rs12535363	0.84[EUR][1000 genomes]
rs12535756	0.84[EUR][1000 genomes]
rs12535766	0.84[EUR][1000 genomes]
rs12536130	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12536586	0.84[EUR][1000 genomes]
rs12537346	0.89[EUR][1000 genomes]
rs12537403	0.84[EUR][1000 genomes]
rs12537545	0.84[EUR][1000 genomes]
rs12537771	0.84[EUR][1000 genomes]
rs12538126	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12539191	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12539522	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12539848	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12540312	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12540447	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12540536	0.84[EUR][1000 genomes]
rs17229513	0.84[EUR][1000 genomes]
rs17229674	0.84[EUR][1000 genomes]
rs17230057	0.84[EUR][1000 genomes]
rs2279934	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2279935	0.85[EUR][1000 genomes]
rs2286682	0.84[EUR][1000 genomes]
rs2286685	0.82[EUR][1000 genomes]
rs2286686	0.84[EUR][1000 genomes]
rs35279320	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735152	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3735153	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3757420	0.89[EUR][1000 genomes]
rs3778906	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs3778911	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800811	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800813	0.89[EUR][1000 genomes]
rs3823608	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4078168	0.84[EUR][1000 genomes]
rs4276561	0.84[EUR][1000 genomes]
rs4717309	0.84[EUR][1000 genomes]
rs4717311	0.84[EUR][1000 genomes]
rs4717312	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717313	0.84[EUR][1000 genomes]
rs4717314	0.84[EUR][1000 genomes]
rs4717316	0.84[EUR][1000 genomes]
rs4717318	0.89[EUR][1000 genomes]
rs4717320	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717323	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717324	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718382	0.84[EUR][1000 genomes]
rs4718390	0.84[EUR][1000 genomes]
rs4718391	0.84[EUR][1000 genomes]
rs4718392	0.84[EUR][1000 genomes]
rs4718393	0.89[EUR][1000 genomes]
rs4718394	0.84[EUR][1000 genomes]
rs4718395	0.89[EUR][1000 genomes]
rs4718396	0.89[EUR][1000 genomes]
rs4718397	0.89[EUR][1000 genomes]
rs4718398	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4718402	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718407	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718409	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464646	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464647	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464648	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464651	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464652	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464653	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464654	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464655	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464658	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464659	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465661	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62465676	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465678	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465681	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465682	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465688	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465698	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465699	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs62465700	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465701	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465705	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465706	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62465707	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465709	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62465710	0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62465712	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62465713	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62465714	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62465716	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62465730	0.93[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62465734	0.85[ASN][1000 genomes]
rs62465750	0.81[ASN][1000 genomes]
rs62465752	0.81[ASN][1000 genomes]
rs62466081	0.84[EUR][1000 genomes]
rs62466083	0.84[EUR][1000 genomes]
rs62466084	0.84[EUR][1000 genomes]
rs62466085	0.84[EUR][1000 genomes]
rs62466086	0.84[EUR][1000 genomes]
rs62466087	0.84[EUR][1000 genomes]
rs62466090	0.84[EUR][1000 genomes]
rs62466091	0.84[EUR][1000 genomes]
rs62466122	0.84[EUR][1000 genomes]
rs62466123	0.84[EUR][1000 genomes]
rs62466126	0.84[EUR][1000 genomes]
rs62466127	0.84[EUR][1000 genomes]
rs62466128	0.84[EUR][1000 genomes]
rs62466133	0.84[EUR][1000 genomes]
rs62466134	0.84[EUR][1000 genomes]
rs62466136	0.84[EUR][1000 genomes]
rs62466137	0.84[EUR][1000 genomes]
rs62466138	0.84[EUR][1000 genomes]
rs62466139	0.84[EUR][1000 genomes]
rs62466141	0.84[EUR][1000 genomes]
rs62466142	0.87[EUR][1000 genomes]
rs62466143	0.87[EUR][1000 genomes]
rs62466144	0.84[EUR][1000 genomes]
rs62466145	0.84[EUR][1000 genomes]
rs62466146	0.84[EUR][1000 genomes]
rs62466147	0.84[EUR][1000 genomes]
rs62466148	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62466787	0.84[EUR][1000 genomes]
rs62466788	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466789	0.84[EUR][1000 genomes]
rs62466792	0.84[EUR][1000 genomes]
rs62466795	0.84[EUR][1000 genomes]
rs62466797	0.84[EUR][1000 genomes]
rs62466798	0.84[EUR][1000 genomes]
rs62466799	0.80[EUR][1000 genomes]
rs62466801	0.84[EUR][1000 genomes]
rs62466802	0.84[EUR][1000 genomes]
rs62466803	0.89[EUR][1000 genomes]
rs62466805	0.84[EUR][1000 genomes]
rs62466806	0.89[EUR][1000 genomes]
rs62466808	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466847	0.89[EUR][1000 genomes]
rs62466848	0.89[EUR][1000 genomes]
rs62466850	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62466851	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62466852	0.89[EUR][1000 genomes]
rs62466855	0.89[EUR][1000 genomes]
rs62466856	0.89[EUR][1000 genomes]
rs62466857	0.89[EUR][1000 genomes]
rs62466858	0.89[EUR][1000 genomes]
rs62466859	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62468260	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62468261	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468262	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468263	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469062	0.84[EUR][1000 genomes]
rs62469064	0.84[EUR][1000 genomes]
rs62469066	0.84[EUR][1000 genomes]
rs62469067	0.84[EUR][1000 genomes]
rs62469069	0.84[EUR][1000 genomes]
rs62469070	0.84[EUR][1000 genomes]
rs62469072	0.82[EUR][1000 genomes]
rs7781008	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
2	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv888329	chr7:66234585-66376095	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66297600-66309000	Weak transcription	Right Atrium	heart
2	chr7:66305800-66308600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr7:66306400-66308600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr7:66307600-66308800	Enhancers	Fetal Intestine Large	intestine
5	chr7:66307800-66308200	Enhancers	HepG2	liver

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