Variant report

Variant	rs62466144
Chromosome Location	chr7:66173671-66173672
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66166858..66168990-chr7:66171829..66174238,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RABGEF1-1	chr7:66172047-66174231	ENSG00000251536

Extended variants
information (count: 261 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:256)

rs_ID	r²[population]
rs10499785	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12530546	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12530947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12531374	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12531377	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531402	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12531690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531758	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12532147	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532173	1.00[EUR][1000 genomes]
rs12532182	1.00[EUR][1000 genomes]
rs12532267	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12532650	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12532888	0.89[ASN][1000 genomes]
rs12533018	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12533744	0.89[EUR][1000 genomes]
rs12533886	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12533958	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533963	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12534192	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12534263	0.97[EUR][1000 genomes]
rs12534355	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12534391	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12534435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12534985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535268	0.89[EUR][1000 genomes]
rs12535321	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12535756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12535766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12536130	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12536586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12536818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537037	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537346	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537825	0.80[EUR][1000 genomes]
rs12538011	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12538113	1.00[EUR][1000 genomes]
rs12538126	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12538131	0.84[EUR][1000 genomes]
rs12539116	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539522	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12539696	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12539749	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12539848	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12540312	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12540447	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12540455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12540536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17228285	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17228728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17229513	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17229674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17230057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17294397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2075004	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2279934	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2279935	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286685	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286686	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28431850	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35279320	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735150	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735152	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3735153	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3757420	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778906	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3778911	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3800811	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800813	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823608	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4078168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4276561	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717301	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4717305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4717309	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717312	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717318	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717320	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717323	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717324	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4717329	0.84[EUR][1000 genomes]
rs4718368	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4718372	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4718376	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718379	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718380	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718381	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4718382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718393	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718394	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718395	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718396	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718397	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718398	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718402	0.95[EUR][1000 genomes]
rs4718407	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718409	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464646	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464647	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464648	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464651	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464652	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464653	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464654	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464655	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464658	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62464659	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465404	1.00[EUR][1000 genomes]
rs62465405	0.92[EUR][1000 genomes]
rs62465422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465424	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465425	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465426	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465427	0.81[EUR][1000 genomes]
rs62465428	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465429	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465431	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465432	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465433	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62465436	0.84[EUR][1000 genomes]
rs62465457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465458	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465661	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62465676	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465678	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465681	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465682	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465688	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465698	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465700	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465701	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62465705	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465706	0.95[EUR][1000 genomes]
rs62465707	0.95[EUR][1000 genomes]
rs62465709	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465710	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465712	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465713	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465714	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465716	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465730	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62465734	0.89[EUR][1000 genomes]
rs62465736	0.84[EUR][1000 genomes]
rs62465738	0.84[EUR][1000 genomes]
rs62465739	0.84[EUR][1000 genomes]
rs62465740	0.84[EUR][1000 genomes]
rs62465741	0.84[EUR][1000 genomes]
rs62465742	0.84[EUR][1000 genomes]
rs62465743	0.84[EUR][1000 genomes]
rs62465744	0.84[EUR][1000 genomes]
rs62465745	0.84[EUR][1000 genomes]
rs62466081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466090	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466091	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466123	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466126	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466128	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466136	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62466138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466139	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466140	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466141	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466142	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466143	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466148	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466792	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62466797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466799	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466803	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466805	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466806	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466808	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466847	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466848	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466849	0.95[ASN][1000 genomes]
rs62466850	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466851	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466852	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466855	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466856	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62466857	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466858	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466859	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467760	0.97[EUR][1000 genomes]
rs62467762	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467763	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467766	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467767	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62467768	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62467769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62467771	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62467801	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467804	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467805	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62467811	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467816	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62467856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62468260	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62468261	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468262	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468263	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469060	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469061	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62469062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469064	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469069	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62469070	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62469072	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7384751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7781008	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7782418	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9801144	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9801269	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv3385090	chr7:66146376-66205022	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3401338	chr7:66147493-66206298	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv888328	chr7:66173040-66327654	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62466144	RABGEF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66148000-66177600	Weak transcription	Aorta	Aorta
2	chr7:66148200-66175600	Weak transcription	Primary B cells from cord blood	blood
3	chr7:66148400-66178400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:66148400-66182400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr7:66148400-66184400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:66148400-66184800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr7:66148600-66177400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:66149000-66177600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr7:66149000-66199600	Weak transcription	Thymus	Thymus
10	chr7:66149600-66178400	Weak transcription	GM12878-XiMat	blood
11	chr7:66149600-66190200	Weak transcription	Hela-S3	cervix
12	chr7:66151400-66178400	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:66153400-66178400	Weak transcription	Fetal Kidney	kidney
14	chr7:66153400-66182200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr7:66153600-66174200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr7:66154200-66177400	Weak transcription	Fetal Intestine Large	intestine
17	chr7:66155200-66178400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:66158000-66177200	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr7:66159000-66180000	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr7:66159200-66175400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:66159400-66180000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr7:66159600-66178000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr7:66159600-66178400	Weak transcription	Primary T cells from cord blood	blood
24	chr7:66159600-66190600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr7:66159800-66177800	Weak transcription	HSMMtube	muscle
26	chr7:66159800-66180800	Weak transcription	Brain Germinal Matrix	brain
27	chr7:66160000-66177400	Weak transcription	Liver	Liver
28	chr7:66162200-66177000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr7:66162400-66177600	Weak transcription	Placenta	Placenta
30	chr7:66162400-66189400	Weak transcription	Psoas Muscle	Psoas
31	chr7:66162600-66174200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr7:66162600-66175800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr7:66162600-66177400	Weak transcription	NHLF	lung
34	chr7:66162600-66178400	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr7:66162600-66178400	Weak transcription	NHEK	skin
36	chr7:66162600-66180600	Weak transcription	HMEC	breast
37	chr7:66162600-66192400	Weak transcription	NH-A	brain
38	chr7:66162600-66196800	Weak transcription	Right Ventricle	heart
39	chr7:66162800-66177600	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr7:66163000-66175000	Weak transcription	HSMM	muscle
41	chr7:66163000-66190800	Weak transcription	Esophagus	oesophagus
42	chr7:66163400-66178400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr7:66163600-66178400	Weak transcription	Fetal Brain Male	brain
44	chr7:66164000-66180800	Weak transcription	HepG2	liver
45	chr7:66164400-66177400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr7:66165200-66189800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr7:66165400-66177400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr7:66165400-66177400	Weak transcription	Fetal Muscle Leg	muscle
49	chr7:66165400-66177600	Weak transcription	Brain Anterior Caudate	brain
50	chr7:66165400-66182400	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links