Variant report

Variant	rs62466085
Chromosome Location	chr7:66121756-66121757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:66116638..66119241-chr7:66120094..66122874,2	K562	blood:
2	chr7:66052648..66055044-chr7:66119940..66122450,2	K562	blood:
3	chr7:66120659..66123648-chr7:66152144..66153650,2	K562	blood:
4	chr7:66121223..66123141-chr7:66144196..66146928,3	MCF-7	breast:
5	chr7:66091844..66094640-chr7:66118336..66122170,5	MCF-7	breast:
6	chr7:66091898..66097382-chr7:66117985..66122507,10	K562	blood:

Variant related genes	Relation type
ENSG00000243335	Chromatin interaction

Extended variants
information (count: 277 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:267)

rs_ID	r²[population]
rs10499785	0.95[EUR][1000 genomes]
rs12530546	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12530947	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531374	0.95[EUR][1000 genomes]
rs12531377	0.95[EUR][1000 genomes]
rs12531402	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12531690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12531758	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532147	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12532173	1.00[EUR][1000 genomes]
rs12532182	1.00[EUR][1000 genomes]
rs12532247	1.00[EUR][1000 genomes]
rs12532249	1.00[EUR][1000 genomes]
rs12532267	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12532383	1.00[EUR][1000 genomes]
rs12532650	0.81[EUR][1000 genomes]
rs12532657	0.97[EUR][1000 genomes]
rs12533018	0.95[EUR][1000 genomes]
rs12533744	0.89[EUR][1000 genomes]
rs12533877	1.00[EUR][1000 genomes]
rs12533886	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12533958	0.95[EUR][1000 genomes]
rs12533963	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534039	0.97[EUR][1000 genomes]
rs12534192	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12534263	0.97[EUR][1000 genomes]
rs12534355	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12534391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534435	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534985	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12535268	0.89[EUR][1000 genomes]
rs12535321	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12535363	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12535766	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12536130	0.95[EUR][1000 genomes]
rs12536586	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536818	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12537037	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537346	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537403	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12537545	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12537771	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12538011	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12538113	1.00[EUR][1000 genomes]
rs12538126	0.89[EUR][1000 genomes]
rs12538131	0.84[EUR][1000 genomes]
rs12538686	0.92[EUR][1000 genomes]
rs12539116	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539191	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539522	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539696	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12539749	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12539795	1.00[EUR][1000 genomes]
rs12539848	0.95[EUR][1000 genomes]
rs12540312	0.89[EUR][1000 genomes]
rs12540447	0.89[EUR][1000 genomes]
rs12540455	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12540536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17228285	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17228728	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229513	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17229674	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17230057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17294397	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2075004	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2279934	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2279935	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2286682	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286685	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2286686	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28431850	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35279320	0.90[EUR][1000 genomes]
rs3735146	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735150	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3735152	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3735153	0.95[EUR][1000 genomes]
rs3757420	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778906	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3778911	0.95[EUR][1000 genomes]
rs3800811	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3800813	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3814466	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3823608	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4078168	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4276561	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4717301	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4717305	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717309	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4717311	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4717312	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4717313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717314	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717316	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717318	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4717320	0.95[EUR][1000 genomes]
rs4717323	0.92[EUR][1000 genomes]
rs4717324	0.92[EUR][1000 genomes]
rs4718347	0.90[EUR][1000 genomes]
rs4718350	1.00[EUR][1000 genomes]
rs4718353	0.97[EUR][1000 genomes]
rs4718354	1.00[EUR][1000 genomes]
rs4718368	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4718372	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718376	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718379	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718380	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4718381	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4718390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718393	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718394	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718395	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718396	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718397	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4718398	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4718402	0.95[EUR][1000 genomes]
rs4718407	0.95[EUR][1000 genomes]
rs4718409	0.95[EUR][1000 genomes]
rs62464646	0.95[EUR][1000 genomes]
rs62464647	0.95[EUR][1000 genomes]
rs62464648	0.95[EUR][1000 genomes]
rs62464651	0.95[EUR][1000 genomes]
rs62464652	0.95[EUR][1000 genomes]
rs62464653	0.95[EUR][1000 genomes]
rs62464654	0.95[EUR][1000 genomes]
rs62464655	0.95[EUR][1000 genomes]
rs62464658	0.95[EUR][1000 genomes]
rs62464659	0.90[EUR][1000 genomes]
rs62465391	0.95[EUR][1000 genomes]
rs62465392	1.00[EUR][1000 genomes]
rs62465394	1.00[EUR][1000 genomes]
rs62465395	1.00[EUR][1000 genomes]
rs62465396	1.00[EUR][1000 genomes]
rs62465397	1.00[EUR][1000 genomes]
rs62465399	0.92[EUR][1000 genomes]
rs62465400	1.00[EUR][1000 genomes]
rs62465401	1.00[EUR][1000 genomes]
rs62465402	0.97[EUR][1000 genomes]
rs62465403	0.95[EUR][1000 genomes]
rs62465404	1.00[EUR][1000 genomes]
rs62465405	0.92[EUR][1000 genomes]
rs62465422	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465424	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465425	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465426	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465427	0.81[EUR][1000 genomes]
rs62465428	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465429	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465431	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465432	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62465433	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62465436	0.84[EUR][1000 genomes]
rs62465457	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465458	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62465661	0.92[EUR][1000 genomes]
rs62465676	0.92[EUR][1000 genomes]
rs62465678	0.95[EUR][1000 genomes]
rs62465681	0.95[EUR][1000 genomes]
rs62465682	0.95[EUR][1000 genomes]
rs62465688	0.92[EUR][1000 genomes]
rs62465698	0.92[EUR][1000 genomes]
rs62465700	0.92[EUR][1000 genomes]
rs62465701	0.92[EUR][1000 genomes]
rs62465705	0.92[EUR][1000 genomes]
rs62465706	0.95[EUR][1000 genomes]
rs62465707	0.95[EUR][1000 genomes]
rs62465709	0.95[EUR][1000 genomes]
rs62465710	0.89[EUR][1000 genomes]
rs62465712	0.89[EUR][1000 genomes]
rs62465713	0.89[EUR][1000 genomes]
rs62465714	0.89[EUR][1000 genomes]
rs62465716	0.89[EUR][1000 genomes]
rs62465730	0.89[EUR][1000 genomes]
rs62465734	0.89[EUR][1000 genomes]
rs62466081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466086	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466087	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466090	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466091	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62466122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466125	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466126	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466127	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466128	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466133	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466134	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466137	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62466138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466139	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466140	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62466141	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466142	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466143	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466148	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466787	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466788	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466789	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466792	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466795	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62466797	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466798	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466799	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466803	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466805	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466806	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466808	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62466847	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466848	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466849	0.85[ASN][1000 genomes]
rs62466850	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466851	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466852	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466855	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466856	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62466857	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466858	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62466859	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467760	0.97[EUR][1000 genomes]
rs62467762	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467763	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467766	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467767	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs62467768	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467769	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467770	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467771	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62467801	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467802	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467804	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467805	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62467811	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467814	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62467816	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62467856	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62468260	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62468261	0.95[EUR][1000 genomes]
rs62468262	0.95[EUR][1000 genomes]
rs62468263	0.95[EUR][1000 genomes]
rs62469060	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469061	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62469062	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469064	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469067	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469069	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62469070	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62469072	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7384751	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7781008	0.92[EUR][1000 genomes]
rs7782418	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs9801144	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9801269	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532124	chr7:65371521-66234730	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	nsv1026559	chr7:65617368-66370805	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
3	esv2761151	chr7:66095738-66138285	Flanking Active TSS Strong transcription Genic enhancers Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3496297	chr7:66099491-66136579	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3496298	chr7:66099491-66136579	Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	esv3486481	chr7:66101377-66137773	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv3486482	chr7:66101377-66137773	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv3509629	chr7:66101713-66137585	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv3509631	chr7:66101713-66137585	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
10	nsv967445	chr7:66112743-66133589	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs62466085	RABGEF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66120400-66127400	Weak transcription	Lung	lung
2	chr7:66120400-66127600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:66120600-66121800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:66120600-66127600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:66120600-66127600	Weak transcription	Fetal Brain Male	brain
6	chr7:66120600-66127600	Weak transcription	Fetal Kidney	kidney
7	chr7:66120600-66127600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:66120600-66127600	Weak transcription	Thymus	Thymus
9	chr7:66120600-66129600	Weak transcription	Brain Substantia Nigra	brain
10	chr7:66120600-66129800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:66120600-66132400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr7:66120600-66146000	Weak transcription	Primary T cells from cord blood	blood
13	chr7:66120600-66146200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:66120800-66121800	Enhancers	Fetal Muscle Leg	muscle
15	chr7:66120800-66123200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr7:66120800-66127400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr7:66120800-66127400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr7:66120800-66127600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr7:66120800-66127600	Weak transcription	Brain Germinal Matrix	brain
20	chr7:66120800-66132000	Weak transcription	Fetal Brain Female	brain
21	chr7:66120800-66143600	Weak transcription	GM12878-XiMat	blood
22	chr7:66120800-66146000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr7:66121000-66121800	Enhancers	Ovary	ovary
24	chr7:66121000-66121800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr7:66121000-66122200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr7:66121000-66122200	Enhancers	Brain Cingulate Gyrus	brain
27	chr7:66121000-66123800	Weak transcription	Fetal Intestine Small	intestine
28	chr7:66121000-66127200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr7:66121000-66127400	Weak transcription	A549	lung
30	chr7:66121000-66127600	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:66121000-66139400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr7:66121000-66143600	Weak transcription	Primary B cells from peripheral blood	blood
33	chr7:66121000-66144000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:66121000-66146200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr7:66121000-66146200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr7:66121200-66121800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr7:66121200-66122200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr7:66121200-66123000	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr7:66121200-66124400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr7:66121200-66127400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:66121200-66127400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr7:66121200-66127400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr7:66121200-66130600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr7:66121200-66131400	Weak transcription	Brain Angular Gyrus	brain
45	chr7:66121200-66137800	Weak transcription	HMEC	breast
46	chr7:66121400-66121800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr7:66121400-66121800	Enhancers	Muscle Satellite Cultured Cells	--
48	chr7:66121400-66121800	Enhancers	Dnd41	blood
49	chr7:66121400-66122000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr7:66121400-66122200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links