Variant report

Variant	rs36033865
Chromosome Location	chr3:47617679-47617680
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47554795..47556707-chr3:47616257..47618627,2	K562	blood:

Variant related genes	Relation type
ENSG00000163832	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1014228	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10865948	0.85[EUR][1000 genomes]
rs11130139	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130143	0.81[EUR][1000 genomes]
rs11716582	0.82[EUR][1000 genomes]
rs11929303	0.81[EUR][1000 genomes]
rs12489865	0.87[AMR][1000 genomes]
rs12636198	0.85[EUR][1000 genomes]
rs13085978	0.82[EUR][1000 genomes]
rs1403578	0.81[EUR][1000 genomes]
rs1403579	0.81[EUR][1000 genomes]
rs1464614	0.81[EUR][1000 genomes]
rs2049300	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2280567	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2293226	0.84[EUR][1000 genomes]
rs34616865	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3732530	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3755637	0.87[EUR][1000 genomes]
rs3755638	0.88[EUR][1000 genomes]
rs3772403	0.86[EUR][1000 genomes]
rs4274776	0.82[EUR][1000 genomes]
rs4858801	0.82[EUR][1000 genomes]
rs4858842	0.81[EUR][1000 genomes]
rs56746603	0.80[EUR][1000 genomes]
rs60110914	0.88[EUR][1000 genomes]
rs60322343	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61620099	0.82[EUR][1000 genomes]
rs61675361	0.82[EUR][1000 genomes]
rs6774170	0.80[EUR][1000 genomes]
rs7631950	0.82[EUR][1000 genomes]
rs868255	0.81[EUR][1000 genomes]
rs869508	0.87[EUR][1000 genomes]
rs870622	0.81[EUR][1000 genomes]
rs883661	0.80[EUR][1000 genomes]
rs883662	0.80[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs36033865	ZNF589	cis	Nerve Tibial	GTEx
rs36033865	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs36033865	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs36033865	MRPS18AP1	cis	Nerve Tibial	GTEx
rs36033865	DHX30	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47608600-47618200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:47615200-47618200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:47615400-47617800	Weak transcription	Fetal Brain Female	brain
4	chr3:47615600-47618800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:47615800-47618200	Weak transcription	Brain Angular Gyrus	brain
6	chr3:47615800-47618200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:47615800-47618400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:47615800-47619000	Weak transcription	Left Ventricle	heart
9	chr3:47616000-47618400	Weak transcription	Brain Cingulate Gyrus	brain
10	chr3:47616000-47618600	Weak transcription	Brain Anterior Caudate	brain
11	chr3:47616000-47619000	Weak transcription	Brain Substantia Nigra	brain
12	chr3:47616600-47618800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:47616800-47618000	Enhancers	K562	blood
14	chr3:47616800-47619000	Genic enhancers	Cortex derived primary cultured neurospheres	brain
15	chr3:47617200-47618400	Weak transcription	Fetal Brain Male	brain
16	chr3:47617400-47617800	Genic enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr3:47617400-47618200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr3:47617600-47619200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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