Variant report

Variant	rs2293226
Chromosome Location	chr3:47626782-47626783
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47626485-47627122	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr3:47626781-47627228	K562	blood:	n/a	n/a
3	POLR2A	chr3:47624593-47627289	K562	blood:	n/a	n/a
4	POLR2A	chr3:47624594-47627314	K562	blood:	n/a	n/a
5	POLR2A	chr3:47625872-47626995	K562	blood:	n/a	n/a
6	POLR2A	chr3:47623664-47627011	HepG2	liver:	n/a	n/a
7	POLR2A	chr3:47625922-47627193	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:47623510..47627210-chr3:47627336..47630594,4	K562	blood:
2	chr3:47626148..47628100-chr3:47639551..47641928,2	K562	blood:
3	chr3:47625595..47627184-chr3:47629457..47631790,2	K562	blood:
4	chr3:47619922..47623291-chr3:47623987..47627464,3	MCF-7	breast:

No data

Variant related genes	Relation type
CSPG5	TF binding region
ENSG00000114646	Chromatin interaction

Extended variants
information (count: 139 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:139)

rs_ID	r²[population]
rs1014228	0.94[ASW][hapmap];0.96[CEU][hapmap];0.96[GIH][hapmap];0.96[LWK][hapmap];0.94[MKK][hapmap];0.94[TSI][hapmap];0.90[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10865948	0.88[CEU][hapmap];0.89[CHB][hapmap];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130138	0.88[ASW][hapmap];0.88[CEU][hapmap];0.89[CHB][hapmap];0.93[GIH][hapmap];0.80[LWK][hapmap];0.85[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11130139	0.92[CEU][hapmap];0.94[EUR][1000 genomes]
rs11130143	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11130144	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.85[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130145	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130146	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11130147	0.86[AMR][1000 genomes]
rs11130148	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes]
rs11708849	0.80[AMR][1000 genomes]
rs11712152	0.85[EUR][1000 genomes]
rs11712464	1.00[CEU][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap]
rs11714942	0.87[AMR][1000 genomes]
rs11716582	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11929303	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12489865	0.88[ASW][hapmap];1.00[CEU][hapmap];0.85[GIH][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs12492915	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12495204	0.83[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs12497921	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12498027	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12633604	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12635438	1.00[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap]
rs12636198	0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12636863	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13061412	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13063042	0.87[ASW][hapmap];1.00[CEU][hapmap];0.94[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes]
rs13064183	0.87[AMR][1000 genomes]
rs13069142	0.87[EUR][1000 genomes]
rs13070035	0.83[AMR][1000 genomes]
rs13081356	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13084555	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13085978	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13086149	0.90[AMR][1000 genomes]
rs13091913	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs13094264	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes]
rs13098128	0.86[AMR][1000 genomes]
rs1403578	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1403579	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1464614	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1486915	1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes]
rs17079785	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs2030596	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2047559	1.00[CEU][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2049300	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2049301	0.83[AMR][1000 genomes]
rs2101398	0.81[AMR][1000 genomes]
rs2133601	0.88[ASW][hapmap];0.92[CEU][hapmap];0.89[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];0.91[LWK][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes]
rs2140335	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2280567	1.00[CEU][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs2882611	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34252990	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34351471	0.87[AMR][1000 genomes]
rs34569417	0.81[AMR][1000 genomes]
rs34616865	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34777284	0.83[AMR][1000 genomes]
rs34906469	0.82[AMR][1000 genomes]
rs35148469	0.87[AMR][1000 genomes]
rs35167544	0.88[EUR][1000 genomes]
rs35698005	0.89[AMR][1000 genomes]
rs36033865	0.84[EUR][1000 genomes]
rs3732530	0.94[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.89[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.86[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs3755637	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3755638	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3772399	0.85[AMR][1000 genomes]
rs3772403	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3888	0.82[AMR][1000 genomes]
rs3915654	0.85[AMR][1000 genomes]
rs4274776	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4410463	0.83[AMR][1000 genomes]
rs4858801	0.92[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858803	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4858835	0.84[AMR][1000 genomes]
rs4858836	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4858842	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858846	1.00[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858851	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes]
rs4858857	0.86[AMR][1000 genomes]
rs4858860	0.82[AMR][1000 genomes]
rs56746603	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60110914	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60322343	0.95[EUR][1000 genomes]
rs61181421	0.86[AMR][1000 genomes]
rs61620099	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61675361	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62262129	0.85[AMR][1000 genomes]
rs6442070	0.84[AMR][1000 genomes]
rs6442071	0.82[AMR][1000 genomes]
rs6442072	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6442074	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6442079	0.81[AMR][1000 genomes]
rs6442081	0.83[AMR][1000 genomes]
rs6442082	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs6442083	0.87[AMR][1000 genomes]
rs6442085	0.86[AMR][1000 genomes]
rs6767896	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6767996	0.83[AMR][1000 genomes]
rs6768699	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs6772301	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes]
rs6773467	0.83[AMR][1000 genomes]
rs6773732	0.83[AMR][1000 genomes]
rs6774170	0.94[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6777632	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes]
rs6780395	0.85[AMR][1000 genomes]
rs6782707	0.81[AMR][1000 genomes]
rs6784946	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6785031	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6785669	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.82[AMR][1000 genomes]
rs6786001	0.83[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.82[YRI][hapmap];0.87[AMR][1000 genomes]
rs6789835	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6792350	0.85[AMR][1000 genomes]
rs6792497	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes]
rs6792737	0.87[AMR][1000 genomes]
rs6806860	0.92[CEU][hapmap];0.95[CHB][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];0.92[TSI][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes]
rs72906488	0.84[AMR][1000 genomes]
rs7429162	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs7612219	0.87[AMR][1000 genomes]
rs7613934	0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7618758	0.83[ASW][hapmap];1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.97[TSI][hapmap];0.87[AMR][1000 genomes]
rs7621236	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7624474	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7631950	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7637372	0.89[AMR][1000 genomes]
rs7637950	0.85[AMR][1000 genomes]
rs7638103	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes]
rs7642691	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7645846	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.87[AMR][1000 genomes]
rs7646982	0.82[AMR][1000 genomes]
rs7649393	0.83[AMR][1000 genomes]
rs868255	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs869508	1.00[CEU][hapmap];0.80[CHD][hapmap];0.81[GIH][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs870622	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs883661	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs883662	1.00[CEU][hapmap];0.93[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883663	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9311409	0.81[AMR][1000 genomes]
rs9681917	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap]
rs9757517	0.84[AMR][1000 genomes]
rs9820051	0.84[AMR][1000 genomes]

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs2293226	MRPS18AP1	cis	lung	GTEx
rs2293226	ZNF589	cis	Nerve Tibial	GTEx
rs2293226	ATRIP	cis	cerebellum	SCAN
rs2293226	HYAL2	cis	cerebellum	SCAN
rs2293226	MRPS18AP1	cis	Nerve Tibial	GTEx
rs2293226	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs2293226	ZNF589	cis	cerebellum	SCAN
rs2293226	SMARCC1	cis	cerebellum	SCAN
rs2293226	ZNF589	cis	parietal	SCAN
rs2293226	NME6	cis	Esophagus Muscularis	GTEx
rs2293226	ZNF589	cis	Lymphoblastoid	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47620400-47627000	Weak transcription	Hela-S3	cervix
2	chr3:47620800-47626800	Weak transcription	Gastric	stomach
3	chr3:47620800-47626800	Weak transcription	Left Ventricle	heart
4	chr3:47620800-47626800	Weak transcription	HSMMtube	muscle
5	chr3:47621000-47626800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr3:47621000-47626800	Weak transcription	A549	lung
7	chr3:47621000-47627000	Weak transcription	Aorta	Aorta
8	chr3:47621000-47628400	Weak transcription	Brain Substantia Nigra	brain
9	chr3:47621000-47628800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:47621000-47629000	Weak transcription	Right Ventricle	heart
11	chr3:47621000-47651600	Weak transcription	Right Atrium	heart
12	chr3:47621000-47653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr3:47621200-47626800	Weak transcription	Brain Hippocampus Middle	brain
14	chr3:47621200-47627000	Weak transcription	Lung	lung
15	chr3:47621200-47627000	Weak transcription	Ovary	ovary
16	chr3:47621200-47627200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr3:47621200-47628200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:47621200-47630600	Weak transcription	Fetal Brain Male	brain
19	chr3:47621400-47626800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:47621400-47628200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr3:47621600-47627000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr3:47621600-47630600	Weak transcription	Brain Angular Gyrus	brain
23	chr3:47621800-47626800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr3:47621800-47629000	Weak transcription	Brain Anterior Caudate	brain
25	chr3:47621800-47630600	Weak transcription	Fetal Heart	heart
26	chr3:47622000-47626800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:47622000-47627800	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr3:47622000-47628000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr3:47622200-47626800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:47622200-47628800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:47622200-47630000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr3:47622400-47626800	Weak transcription	Fetal Lung	lung
33	chr3:47622400-47628800	Weak transcription	Esophagus	oesophagus
34	chr3:47622600-47626800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:47622600-47627200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr3:47622600-47653400	Weak transcription	Stomach Mucosa	stomach
37	chr3:47622800-47626800	Weak transcription	Rectal Mucosa Donor 29	rectum
38	chr3:47622800-47628200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:47623000-47632600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:47623200-47627000	Weak transcription	Fetal Intestine Large	intestine
41	chr3:47623200-47632800	Strong transcription	Brain Germinal Matrix	brain
42	chr3:47623400-47626800	Weak transcription	Pancreas	Pancrea
43	chr3:47623400-47627000	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr3:47623400-47627000	Weak transcription	Primary B cells from cord blood	blood
45	chr3:47623400-47627000	Weak transcription	Liver	Liver
46	chr3:47623400-47627000	Weak transcription	Duodenum Mucosa	Duodenum
47	chr3:47623400-47628600	Weak transcription	Colon Smooth Muscle	Colon
48	chr3:47623400-47629400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr3:47623400-47630400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
50	chr3:47623400-47633000	Strong transcription	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links