Variant report

Variant	rs6784946
Chromosome Location	chr3:47595805-47595806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47559554..47562516-chr3:47592934..47596290,3	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs1014228	0.81[EUR][1000 genomes]
rs10865948	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130138	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11130139	0.91[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs11130143	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11130144	0.83[AMR][1000 genomes]
rs11130146	0.81[AMR][1000 genomes]
rs11716582	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11929303	0.82[EUR][1000 genomes]
rs12492915	0.85[AMR][1000 genomes]
rs12497921	0.81[AMR][1000 genomes]
rs12498027	0.83[AMR][1000 genomes]
rs12636198	0.86[EUR][1000 genomes]
rs12636863	0.83[AMR][1000 genomes]
rs13084555	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13085978	0.83[EUR][1000 genomes]
rs13086149	0.82[AMR][1000 genomes]
rs13098128	0.81[AMR][1000 genomes]
rs1403578	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1403579	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1464614	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1486915	0.81[AMR][1000 genomes]
rs2030596	0.81[AMR][1000 genomes]
rs2047559	0.81[AMR][1000 genomes]
rs2140335	0.81[AMR][1000 genomes]
rs2280567	0.86[EUR][1000 genomes]
rs2293226	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2882611	0.83[AMR][1000 genomes]
rs34616865	0.80[EUR][1000 genomes]
rs35167544	0.95[EUR][1000 genomes]
rs35533636	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35698005	0.81[AMR][1000 genomes]
rs3732530	0.86[EUR][1000 genomes]
rs3755637	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3755638	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3772403	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4274776	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4858801	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4858835	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4858836	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858842	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4858846	0.83[AMR][1000 genomes]
rs56746603	0.89[AMR][1000 genomes]
rs60110914	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60322343	0.86[EUR][1000 genomes]
rs60992717	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61620099	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61675361	0.83[EUR][1000 genomes]
rs6442070	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6442071	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6442072	0.85[AMR][1000 genomes]
rs6767896	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6767996	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6774170	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6777632	0.81[AMR][1000 genomes]
rs6780080	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6780395	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6782707	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6785031	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6789835	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7613934	0.85[AMR][1000 genomes]
rs7621236	0.85[AMR][1000 genomes]
rs7624474	0.85[AMR][1000 genomes]
rs7631950	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7637372	0.81[AMR][1000 genomes]
rs7642691	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs868255	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs869508	0.88[EUR][1000 genomes]
rs870622	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs883661	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs883662	0.81[EUR][1000 genomes]
rs883663	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9311409	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9820051	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9835605	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6784946	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs6784946	ZNF589	cis	Nerve Tibial	GTEx
rs6784946	MRPS18AP1	cis	Nerve Tibial	GTEx
rs6784946	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs6784946	MRPS18AP1	cis	lung	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47584200-47607800	Weak transcription	Brain Germinal Matrix	brain
2	chr3:47594600-47596400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:47594600-47596600	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:47595000-47596800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr3:47595200-47602800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr3:47595200-47605400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr3:47595200-47605600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr3:47595200-47612600	Weak transcription	Brain Substantia Nigra	brain
9	chr3:47595400-47606600	Weak transcription	Brain Hippocampus Middle	brain
10	chr3:47595800-47596200	Enhancers	H1 Cell Line	embryonic stem cell

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