Variant report

Variant	rs2140335
Chromosome Location	chr3:47705115-47705116
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47705027-47705212	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:47704986-47705547	GM12892	blood:	n/a	n/a
3	GABPA	chr3:47705102-47705263	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr3:47704920-47705553	K562	blood:	n/a	n/a
5	POLR2A	chr3:47705001-47705371	GM12878	blood:	n/a	n/a
6	POLR2A	chr3:47705039-47705722	GM12878	blood:	n/a	n/a
7	POLR2A	chr3:47704948-47705160	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr3:47705107-47705391	Hela-S3	cervix:	n/a	n/a
9	POLR2A	chr3:47704918-47705714	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr3:47704929-47705724	GM12892	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000235695	TF binding region

Extended variants
information (count: 150 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:146)

rs_ID	r²[population]
rs1014228	0.96[CEU][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs10865948	0.89[CEU][hapmap];0.95[CHB][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes]
rs11130138	0.88[CEU][hapmap];0.94[CHB][hapmap];0.92[YRI][hapmap];0.83[AMR][1000 genomes]
rs11130139	0.92[CEU][hapmap];0.96[YRI][hapmap]
rs11130143	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130145	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11130146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130147	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11130150	0.82[AMR][1000 genomes]
rs11707707	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11708849	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11712152	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11712464	1.00[CEU][hapmap];0.94[JPT][hapmap];0.86[EUR][1000 genomes]
rs11714942	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11716582	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11927129	0.84[EUR][1000 genomes]
rs11929303	0.83[EUR][1000 genomes]
rs12489865	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12492915	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12495204	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12497921	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12498027	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12633604	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12635438	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12636863	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13061412	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13063042	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13064183	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13069142	0.87[EUR][1000 genomes]
rs13070035	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13077230	0.83[AMR][1000 genomes]
rs13079407	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs13081356	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13084555	0.82[AMR][1000 genomes]
rs13085978	0.84[EUR][1000 genomes]
rs13086149	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13091913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs13094264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13098128	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1403578	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1403579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1464614	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1486915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1684942	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs17079785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17290490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2030596	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2047559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2049300	0.80[AFR][1000 genomes]
rs2049301	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2101398	0.88[AMR][1000 genomes]
rs2133601	0.92[CEU][hapmap];0.94[CHB][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2280567	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs2293226	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2351248	0.81[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap]
rs2882611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs319693	1.00[CEU][hapmap];0.84[CHB][hapmap];0.87[JPT][hapmap]
rs319694	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs319695	0.88[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap]
rs34252990	0.81[EUR][1000 genomes]
rs34351471	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34569417	0.88[AMR][1000 genomes]
rs34616865	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs34777284	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34906469	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs35148469	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35582375	0.83[AMR][1000 genomes]
rs35664069	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35698005	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs3732530	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs3755637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3755638	0.87[AMR][1000 genomes]
rs3772399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs3772403	0.87[AMR][1000 genomes]
rs3888	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs3915654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs4274776	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4410463	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4858801	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858803	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858836	0.83[AMR][1000 genomes]
rs4858842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4858846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858851	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4858857	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4858860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes]
rs4858863	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs55823596	0.80[EUR][1000 genomes]
rs56376646	0.86[EUR][1000 genomes]
rs56746603	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs60110914	0.84[AMR][1000 genomes]
rs61181421	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs61620099	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61675361	0.85[EUR][1000 genomes]
rs62262129	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62263561	0.80[EUR][1000 genomes]
rs62263575	0.86[AMR][1000 genomes]
rs6442072	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442074	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6442079	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6442081	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6442082	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6442083	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6442085	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6768699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6772301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6773467	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6773732	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6774170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6776963	0.96[CEU][hapmap];0.84[CHB][hapmap];0.93[JPT][hapmap]
rs6777632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6782998	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6784946	0.81[AMR][1000 genomes]
rs6785031	0.83[AMR][1000 genomes]
rs6785669	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6786001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6792350	0.92[AMR][1000 genomes]
rs6792497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6792737	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6806860	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72906488	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73085151	0.80[EUR][1000 genomes]
rs7429162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7612219	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7613934	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7618758	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7621236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7624474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7629850	1.00[CEU][hapmap];0.84[CHB][hapmap];0.94[JPT][hapmap]
rs7631950	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7637372	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7637950	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7638103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7645846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7646982	0.91[AMR][1000 genomes]
rs7649393	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs868255	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs869508	1.00[CEU][hapmap];0.84[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes]
rs870622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883661	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs883662	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[JPT][hapmap];0.85[EUR][1000 genomes]
rs883663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9681917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9757517	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv590232	chr3:47681881-47765547	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv876758	chr3:47681881-47842234	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
4	nsv967013	chr3:47704199-47705557	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2140335	NME6	cis	Esophagus Muscularis	GTEx
rs2140335	MRPS18AP1	cis	lung	GTEx
rs2140335	MRPS18AP1	cis	Nerve Tibial	GTEx
rs2140335	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs2140335	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs2140335	ZNF589	cis	Nerve Tibial	GTEx
rs2140335	DHX30	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47654400-47707600	Weak transcription	Stomach Mucosa	stomach
2	chr3:47655800-47765600	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr3:47656600-47790800	Strong transcription	Fetal Thymus	thymus
4	chr3:47661400-47711400	Weak transcription	Colonic Mucosa	Colon
5	chr3:47672000-47718600	Weak transcription	Right Ventricle	heart
6	chr3:47673600-47719200	Weak transcription	Small Intestine	intestine
7	chr3:47677200-47707400	Weak transcription	HMEC	breast
8	chr3:47677200-47715400	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:47677200-47720000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:47677400-47711600	Weak transcription	Brain Substantia Nigra	brain
11	chr3:47677800-47712000	Weak transcription	Brain Angular Gyrus	brain
12	chr3:47678000-47717800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr3:47684200-47711800	Weak transcription	Ovary	ovary
14	chr3:47684600-47705200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr3:47684800-47705200	Weak transcription	Aorta	Aorta
16	chr3:47684800-47718400	Weak transcription	Spleen	Spleen
17	chr3:47688200-47705200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr3:47688200-47763400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr3:47688600-47710600	Weak transcription	Adipose Nuclei	Adipose
20	chr3:47688600-47718000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr3:47689800-47711800	Weak transcription	Left Ventricle	heart
22	chr3:47689800-47714200	Weak transcription	Psoas Muscle	Psoas
23	chr3:47692800-47719200	Weak transcription	Gastric	stomach
24	chr3:47694400-47745800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:47695000-47705600	Strong transcription	Liver	Liver
26	chr3:47695000-47713800	Strong transcription	Primary B cells from peripheral blood	blood
27	chr3:47695200-47737200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr3:47697000-47709200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr3:47697800-47706400	Strong transcription	Duodenum Mucosa	Duodenum
30	chr3:47698200-47709200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr3:47698400-47731400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr3:47698600-47705600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr3:47699000-47705400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr3:47699000-47712600	Strong transcription	Fetal Muscle Trunk	muscle
35	chr3:47699800-47705400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:47700200-47705200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr3:47700200-47715200	Weak transcription	Fetal Brain Male	brain
38	chr3:47700200-47757000	Weak transcription	Pancreatic Islets	Pancreatic Islet
39	chr3:47700400-47707600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr3:47700400-47710600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr3:47700400-47710600	Weak transcription	Stomach Smooth Muscle	stomach
42	chr3:47700400-47715400	Weak transcription	Fetal Heart	heart
43	chr3:47700600-47705400	Strong transcription	Primary monocytes fromperipheralblood	blood
44	chr3:47700600-47710200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr3:47700600-47711200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr3:47700600-47718400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr3:47700800-47710200	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr3:47701200-47765000	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr3:47701200-47765600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:47701400-47739800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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