Variant report

Variant	rs11130143
Chromosome Location	chr3:47656433-47656434
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47656348-47656638	K562	blood:	n/a	n/a
2	POLR2A	chr3:47656374-47656546	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr3:47656397-47656629	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47649586..47653440-chr3:47655604..47658043,5	K562	blood:

Variant related genes	Relation type
SMARCC1	TF binding region
ENSG00000173473	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 12 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1014228	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10865948	0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11130138	0.94[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11130139	0.92[CEU][hapmap];0.93[YRI][hapmap];0.91[EUR][1000 genomes]
rs11130144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130145	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130147	0.89[AMR][1000 genomes]
rs11130148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes]
rs11712152	0.89[EUR][1000 genomes]
rs11712464	1.00[CEU][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs11714942	0.90[AMR][1000 genomes]
rs11716582	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929303	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12489865	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs12492915	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12495204	0.89[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs12497921	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498027	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12633604	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12635438	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.82[EUR][1000 genomes]
rs12636198	0.92[EUR][1000 genomes]
rs12636863	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13061412	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13063042	0.94[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13064183	0.90[AMR][1000 genomes]
rs13069142	0.92[EUR][1000 genomes]
rs13070035	0.85[AMR][1000 genomes]
rs13081356	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13084555	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13085978	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13086149	0.87[AMR][1000 genomes]
rs13091913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes]
rs13094264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes]
rs13098128	0.86[AMR][1000 genomes]
rs1403578	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403579	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes]
rs17079785	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs2030596	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2047559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2049300	0.94[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2049301	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2133601	0.94[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2140335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280567	1.00[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs2293226	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351248	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2882611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34252990	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34351471	0.90[AMR][1000 genomes]
rs34616865	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs34777284	0.85[AMR][1000 genomes]
rs35148469	0.90[AMR][1000 genomes]
rs35167544	0.85[EUR][1000 genomes]
rs35664069	0.84[EUR][1000 genomes]
rs35698005	0.86[AMR][1000 genomes]
rs36033865	0.81[EUR][1000 genomes]
rs3732530	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs3755637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3755638	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772399	0.83[AMR][1000 genomes]
rs3772403	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3915654	0.83[AMR][1000 genomes]
rs4274776	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4410463	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858801	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858803	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4858835	0.82[AMR][1000 genomes]
rs4858836	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4858842	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858851	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes]
rs4858857	0.86[AMR][1000 genomes]
rs4858863	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs56746603	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60110914	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60322343	0.92[EUR][1000 genomes]
rs61181421	0.84[AMR][1000 genomes]
rs61620099	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61675361	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62262129	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6442070	0.82[AMR][1000 genomes]
rs6442072	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6442074	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6442079	0.83[AMR][1000 genomes]
rs6442081	0.85[AMR][1000 genomes]
rs6442082	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs6442083	0.90[AMR][1000 genomes]
rs6442085	0.86[AMR][1000 genomes]
rs6767896	0.89[AMR][1000 genomes]
rs6767996	0.81[AMR][1000 genomes]
rs6768699	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6772301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6773467	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6773732	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6774170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6776963	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs6777632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes]
rs6780395	0.83[AMR][1000 genomes]
rs6784946	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6785031	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6785669	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.84[AMR][1000 genomes]
rs6786001	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs6789835	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6792350	0.83[AMR][1000 genomes]
rs6792497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6792737	0.90[AMR][1000 genomes]
rs6806860	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs72906488	0.82[AMR][1000 genomes]
rs7429162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7612219	0.90[AMR][1000 genomes]
rs7613934	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618758	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.90[AMR][1000 genomes]
rs7621236	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7624474	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7631950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7637372	0.89[AMR][1000 genomes]
rs7637950	0.85[AMR][1000 genomes]
rs7638103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes]
rs7642691	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7645846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs7646982	0.82[AMR][1000 genomes]
rs7649393	0.85[AMR][1000 genomes]
rs868255	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs869508	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs870622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883661	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883662	1.00[CEU][hapmap];0.93[JPT][hapmap];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs883663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap]
rs9757517	0.84[AMR][1000 genomes]
rs9820051	0.82[AMR][1000 genomes]

mRNA abundance (count:12)

SNP	Gene	Cis/trans	Tissue	Source
rs11130143	ZNF589	cis	cerebellum	SCAN
rs11130143	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs11130143	ZNF589	cis	Nerve Tibial	GTEx
rs11130143	NME6	cis	Esophagus Muscularis	GTEx
rs11130143	MRPS18AP1	cis	lung	GTEx
rs11130143	ZNF589	cis	parietal	SCAN
rs11130143	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs11130143	ATRIP	cis	cerebellum	SCAN
rs11130143	MRPS18AP1	cis	Nerve Tibial	GTEx
rs11130143	SMARCC1	cis	cerebellum	SCAN
rs11130143	HYAL2	cis	cerebellum	SCAN
rs11130143	MRPS18AP1	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47626200-47698600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:47626400-47680600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:47626600-47688600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:47626600-47699800	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:47626800-47680800	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr3:47632400-47658600	Weak transcription	A549	lung
7	chr3:47632400-47660800	Weak transcription	Esophagus	oesophagus
8	chr3:47634200-47661000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:47635000-47686800	Strong transcription	Dnd41	blood
10	chr3:47636800-47672800	Weak transcription	Small Intestine	intestine
11	chr3:47637200-47665000	Strong transcription	Primary T cells from cord blood	blood
12	chr3:47638000-47681200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr3:47638200-47665800	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr3:47639200-47675800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr3:47643600-47684800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr3:47643800-47666400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:47644200-47676000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr3:47644400-47664600	Strong transcription	Duodenum Mucosa	Duodenum
19	chr3:47644600-47663800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:47645000-47656600	Strong transcription	K562	blood
21	chr3:47645200-47663200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr3:47645400-47656800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:47645400-47663600	Strong transcription	HepG2	liver
24	chr3:47645800-47664600	Strong transcription	Primary hematopoietic stem cells	blood
25	chr3:47646600-47658600	Strong transcription	Fetal Brain Female	brain
26	chr3:47646600-47666600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr3:47648000-47670600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr3:47651800-47660800	Weak transcription	Gastric	stomach
29	chr3:47651800-47661000	Weak transcription	Colonic Mucosa	Colon
30	chr3:47651800-47666800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr3:47652000-47657800	Weak transcription	Ovary	ovary
32	chr3:47652000-47660600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr3:47652000-47660600	Weak transcription	Lung	lung
34	chr3:47652200-47657000	Enhancers	Fetal Heart	heart
35	chr3:47652200-47658200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr3:47652400-47658200	Weak transcription	Primary neutrophils fromperipheralblood	blood
37	chr3:47652400-47658800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr3:47652400-47660200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:47652600-47657000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr3:47652800-47657600	Weak transcription	Placenta	Placenta
41	chr3:47652800-47658400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr3:47653000-47656600	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr3:47653000-47656800	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:47653000-47656800	Enhancers	Brain Hippocampus Middle	brain
45	chr3:47653200-47656800	Enhancers	Brain Angular Gyrus	brain
46	chr3:47653200-47657000	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr3:47653200-47657000	Genic enhancers	NH-A	brain
48	chr3:47653400-47656600	Enhancers	Brain Substantia Nigra	brain
49	chr3:47653400-47657000	Enhancers	Brain Inferior Temporal Lobe	brain
50	chr3:47653400-47660800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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