Variant report

Variant	rs6442070
Chromosome Location	chr3:47589542-47589543
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47588216..47589914-chr3:47595916..47598160,2	MCF-7	breast:
2	chr3:47587613..47590274-chr3:47819316..47821047,2	K562	blood:

Extended variants
information (count: 81 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1014228	0.84[CEU][hapmap]
rs10865948	1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11130138	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11130139	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs11130143	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs11130144	0.88[CEU][hapmap]
rs11130146	0.88[CEU][hapmap]
rs11130148	0.88[CEU][hapmap];0.85[YRI][hapmap]
rs11712464	0.88[CEU][hapmap];0.86[CHB][hapmap]
rs11716582	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs11917071	0.81[ASN][1000 genomes]
rs12489865	0.88[CEU][hapmap]
rs12495204	0.84[CEU][hapmap]
rs12635438	0.88[CEU][hapmap];0.93[CHB][hapmap]
rs12636198	0.81[EUR][1000 genomes]
rs13061412	0.87[CEU][hapmap]
rs13063042	0.89[CEU][hapmap]
rs13084555	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13094264	0.88[CEU][hapmap];0.85[YRI][hapmap]
rs1403578	0.88[CEU][hapmap]
rs1403579	0.88[CEU][hapmap]
rs1464614	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs17079785	0.88[CEU][hapmap]
rs2047559	0.89[CEU][hapmap]
rs2133601	0.88[CEU][hapmap]
rs2140335	0.89[CEU][hapmap]
rs2280567	0.89[CEU][hapmap];0.80[EUR][1000 genomes]
rs2291903	1.00[JPT][hapmap]
rs2293226	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs2882611	0.89[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap]
rs35167544	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35533636	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3732530	0.88[CEU][hapmap];0.80[EUR][1000 genomes]
rs3755637	0.96[CEU][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3755638	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3772403	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4274776	0.88[CEU][hapmap];0.82[AMR][1000 genomes]
rs4858801	0.81[CEU][hapmap];0.84[AMR][1000 genomes]
rs4858835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858836	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4858842	0.88[CEU][hapmap]
rs4858846	0.88[CEU][hapmap]
rs4858851	0.88[CEU][hapmap];0.85[YRI][hapmap]
rs56746603	0.81[AMR][1000 genomes]
rs60110914	0.82[AMR][1000 genomes]
rs60322343	0.80[EUR][1000 genomes]
rs60992717	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61620099	0.84[AMR][1000 genomes]
rs6442071	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6442072	0.82[AMR][1000 genomes]
rs6442082	0.92[CEU][hapmap]
rs6767896	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6767996	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6768699	0.88[CEU][hapmap]
rs6772301	0.92[CEU][hapmap]
rs6774170	0.88[CEU][hapmap]
rs6780080	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6780395	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782707	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6784946	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6785031	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6785669	0.88[CEU][hapmap];0.85[YRI][hapmap]
rs6786001	0.88[CEU][hapmap]
rs6789835	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792497	0.89[CEU][hapmap]
rs7429162	0.88[CEU][hapmap];0.85[YRI][hapmap]
rs7613934	0.88[CEU][hapmap]
rs7618758	0.88[CEU][hapmap]
rs7621236	0.88[CEU][hapmap]
rs7624474	0.88[CEU][hapmap]
rs7631950	0.88[CEU][hapmap];0.84[AMR][1000 genomes]
rs7638103	0.88[CEU][hapmap];0.81[CHB][hapmap];0.85[YRI][hapmap]
rs7642691	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7645846	0.85[CEU][hapmap]
rs869508	0.88[CEU][hapmap];0.93[CHB][hapmap];0.82[EUR][1000 genomes]
rs870622	0.88[CEU][hapmap]
rs883662	0.89[CEU][hapmap];0.92[CHB][hapmap]
rs883663	0.88[CEU][hapmap];0.81[YRI][hapmap];0.83[AMR][1000 genomes]
rs9311409	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9820051	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9835605	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6442070	MRPS18AP1	cis	lung	GTEx
rs6442070	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs6442070	MRPS18AP1	cis	Artery Tibial	GTEx
rs6442070	ZNF589	cis	Nerve Tibial	GTEx
rs6442070	NME6	cis	Esophagus Muscularis	GTEx
rs6442070	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs6442070	MRPS18AP1	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47584200-47607800	Weak transcription	Brain Germinal Matrix	brain

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