Variant report

Variant	rs6780395
Chromosome Location	chr3:47591020-47591021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47582813..47585276-chr3:47590565..47592915,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10865948	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11130138	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130143	0.83[AMR][1000 genomes]
rs11716582	0.85[AMR][1000 genomes]
rs13084555	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1403578	0.81[AMR][1000 genomes]
rs1403579	0.81[AMR][1000 genomes]
rs1464614	0.83[AMR][1000 genomes]
rs2293226	0.85[AMR][1000 genomes]
rs2882611	0.81[AMR][1000 genomes]
rs35167544	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35533636	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3755637	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3755638	0.84[AMR][1000 genomes]
rs3772403	0.84[AMR][1000 genomes]
rs4274776	0.83[AMR][1000 genomes]
rs4858801	0.85[AMR][1000 genomes]
rs4858835	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858836	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858842	0.81[AMR][1000 genomes]
rs56746603	0.82[AMR][1000 genomes]
rs60110914	0.83[AMR][1000 genomes]
rs60992717	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61620099	0.85[AMR][1000 genomes]
rs6442070	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6442071	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6442072	0.83[AMR][1000 genomes]
rs6767896	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6767996	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6780080	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782707	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784946	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6785031	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6789835	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7631950	0.85[AMR][1000 genomes]
rs7642691	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs868255	0.81[AMR][1000 genomes]
rs869508	0.80[EUR][1000 genomes]
rs870622	0.81[AMR][1000 genomes]
rs883661	0.81[AMR][1000 genomes]
rs883663	0.84[AMR][1000 genomes]
rs9311409	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9820051	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9835605	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6780395	ZNF589	cis	Nerve Tibial	GTEx
rs6780395	MRPS18AP1	cis	Nerve Tibial	GTEx
rs6780395	NME6	cis	Esophagus Muscularis	GTEx
rs6780395	MRPS18AP1	cis	lung	GTEx
rs6780395	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs6780395	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs6780395	MRPS18AP1	cis	Artery Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47584200-47607800	Weak transcription	Brain Germinal Matrix	brain

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