Variant report

Variant	rs4274776
Chromosome Location	chr3:47647358-47647359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:47647182-47647588	HUVEC	blood vessel:	n/a	chr3:47647395-47647406
2	POLR2A	chr3:47647196-47647428	U87	brain:	n/a	n/a
3	POLR2A	chr3:47647157-47647428	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47644023..47648902-chr3:47649054..47653658,7	K562	blood:

Variant related genes	Relation type
ENSG00000214773	TF binding region
ENSG00000173473	Chromatin interaction

Extended variants
information (count: 133 )
Associated
traits (count: 11 )

rSNPs within LD-proxies of this variant (count:132)

rs_ID	r²[population]
rs1014228	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10865948	0.88[CEU][hapmap];0.94[CHB][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11130138	0.94[ASW][hapmap];0.88[CEU][hapmap];0.94[CHB][hapmap];0.98[GIH][hapmap];0.85[LWK][hapmap];0.86[MEX][hapmap];0.88[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11130139	0.92[CEU][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs11130143	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11130144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130145	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11130146	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11130147	0.84[AMR][1000 genomes]
rs11130148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes]
rs11712152	0.87[EUR][1000 genomes]
rs11712464	1.00[CEU][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap]
rs11714942	0.85[AMR][1000 genomes]
rs11716582	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11929303	0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12489865	0.94[ASW][hapmap];1.00[CEU][hapmap];0.84[GIH][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.83[EUR][1000 genomes]
rs12492915	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12495204	0.89[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs12497921	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12498027	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12633604	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12635438	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap]
rs12636198	0.93[EUR][1000 genomes]
rs12636863	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13061412	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13063042	0.94[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13064183	0.85[AMR][1000 genomes]
rs13069142	0.89[EUR][1000 genomes]
rs13070035	0.81[AMR][1000 genomes]
rs13081356	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13084555	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13085978	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13086149	0.87[AMR][1000 genomes]
rs13091913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes]
rs13094264	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes]
rs13098128	0.84[AMR][1000 genomes]
rs1403578	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1403579	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464614	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1486915	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes]
rs17079785	0.83[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs2030596	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2047559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2049300	0.98[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2049301	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2133601	0.94[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];0.96[LWK][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2140335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2280567	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs2293226	0.94[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2351248	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.89[TSI][hapmap]
rs2882611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34252990	0.92[EUR][1000 genomes]
rs34351471	0.85[AMR][1000 genomes]
rs34616865	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs34777284	0.81[AMR][1000 genomes]
rs35148469	0.85[AMR][1000 genomes]
rs35167544	0.86[EUR][1000 genomes]
rs35664069	0.82[EUR][1000 genomes]
rs35698005	0.86[AMR][1000 genomes]
rs36033865	0.82[EUR][1000 genomes]
rs3732530	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs3755637	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];1.00[GIH][hapmap];0.88[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3755638	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3772399	0.83[AMR][1000 genomes]
rs3772403	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3915654	0.83[AMR][1000 genomes]
rs4410463	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4858801	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858803	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4858835	0.82[AMR][1000 genomes]
rs4858836	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4858842	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858851	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes]
rs4858857	0.84[AMR][1000 genomes]
rs56746603	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs60110914	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60322343	0.93[EUR][1000 genomes]
rs61181421	0.84[AMR][1000 genomes]
rs61620099	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61675361	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62262129	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6442070	0.82[AMR][1000 genomes]
rs6442072	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6442074	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6442081	0.81[AMR][1000 genomes]
rs6442082	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs6442083	0.85[AMR][1000 genomes]
rs6442085	0.84[AMR][1000 genomes]
rs6767896	0.89[AMR][1000 genomes]
rs6767996	0.81[AMR][1000 genomes]
rs6768699	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6772301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6773467	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6773732	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6774170	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6776963	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.94[TSI][hapmap]
rs6777632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes]
rs6780395	0.83[AMR][1000 genomes]
rs6784946	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6785031	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6785669	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap]
rs6786001	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs6789835	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6792350	0.83[AMR][1000 genomes]
rs6792497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs6792737	0.85[AMR][1000 genomes]
rs6806860	0.83[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs72906488	0.82[AMR][1000 genomes]
rs7429162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7612219	0.85[AMR][1000 genomes]
rs7613934	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7618758	0.89[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.94[TSI][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes]
rs7621236	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7624474	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7631950	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7637372	0.86[AMR][1000 genomes]
rs7637950	0.83[AMR][1000 genomes]
rs7638103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.81[AMR][1000 genomes]
rs7642691	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7645846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes]
rs7646982	0.80[AMR][1000 genomes]
rs7649393	0.81[AMR][1000 genomes]
rs868255	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs869508	1.00[CEU][hapmap];0.84[CHB][hapmap];0.81[CHD][hapmap];0.85[GIH][hapmap];0.82[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs870622	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883661	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs883662	1.00[CEU][hapmap];0.93[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs883663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9681917	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.92[TSI][hapmap]
rs9757517	0.82[AMR][1000 genomes]
rs9820051	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1835200	chr3:47642233-47654375	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:11)

SNP	Gene	Cis/trans	Tissue	Source
rs4274776	ZNF589	cis	cerebellum	SCAN
rs4274776	ZNF589	cis	parietal	SCAN
rs4274776	NME6	cis	Esophagus Muscularis	GTEx
rs4274776	MRPS18AP1	cis	Nerve Tibial	GTEx
rs4274776	ZNF589	cis	Nerve Tibial	GTEx
rs4274776	ATRIP	cis	cerebellum	SCAN
rs4274776	ZNF589	cis	Lymphoblastoid	GTEx
rs4274776	MRPS18AP1	cis	lung	GTEx
rs4274776	SMARCC1	cis	cerebellum	SCAN
rs4274776	HYAL2	cis	cerebellum	SCAN
rs4274776	MRPS18AP1	cis	Muscle Skeletal	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47621000-47651600	Weak transcription	Right Atrium	heart
2	chr3:47621000-47653400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr3:47622600-47653400	Weak transcription	Stomach Mucosa	stomach
4	chr3:47623400-47655000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:47624000-47653200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr3:47625400-47651400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:47625600-47651200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr3:47626200-47698600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr3:47626400-47655600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:47626400-47680600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:47626600-47688600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
12	chr3:47626600-47699800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr3:47626800-47680800	Strong transcription	Primary T cells fromperipheralblood	blood
14	chr3:47631000-47650000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr3:47631200-47650200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:47632000-47648800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr3:47632200-47648400	Weak transcription	NHDF-Ad	bronchial
18	chr3:47632200-47649200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr3:47632200-47649800	Weak transcription	Colonic Mucosa	Colon
20	chr3:47632200-47651200	Weak transcription	Right Ventricle	heart
21	chr3:47632400-47651400	Weak transcription	Gastric	stomach
22	chr3:47632400-47651400	Weak transcription	Pancreas	Pancrea
23	chr3:47632400-47652800	Weak transcription	Aorta	Aorta
24	chr3:47632400-47658600	Weak transcription	A549	lung
25	chr3:47632400-47660800	Weak transcription	Esophagus	oesophagus
26	chr3:47632600-47648400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr3:47632800-47649800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr3:47632800-47650000	Weak transcription	NHLF	lung
29	chr3:47634200-47661000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr3:47635000-47651400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr3:47635000-47686800	Strong transcription	Dnd41	blood
32	chr3:47636000-47649200	Weak transcription	HMEC	breast
33	chr3:47636400-47647800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr3:47636600-47647800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
35	chr3:47636600-47649000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr3:47636800-47651400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr3:47636800-47672800	Weak transcription	Small Intestine	intestine
38	chr3:47637200-47665000	Strong transcription	Primary T cells from cord blood	blood
39	chr3:47638000-47681200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:47638200-47665800	Strong transcription	H1 Cell Line	embryonic stem cell
41	chr3:47638800-47651400	Strong transcription	Fetal Muscle Leg	muscle
42	chr3:47639000-47652600	Strong transcription	Fetal Intestine Large	intestine
43	chr3:47639200-47653600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr3:47639200-47654600	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr3:47639200-47655000	Strong transcription	Primary B cells from peripheral blood	blood
46	chr3:47639200-47655200	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr3:47639200-47655200	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:47639200-47655600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr3:47639200-47675800	Strong transcription	Monocytes-CD14+_RO01746	blood
50	chr3:47639400-47648200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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