Variant report

Variant	rs3772399
Chromosome Location	chr3:47867727-47867728
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:10)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:10 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47862121-47869038	K562	blood:	n/a	n/a
2	MAX	chr3:47867515-47867744	K562	blood:	n/a	n/a
3	POLR2A	chr3:47867727-47867809	HUVEC	blood vessel:	n/a	n/a
4	MXI1	chr3:47865945-47868033	IMR90	lung:	n/a	n/a
5	POLR2A	chr3:47865880-47867752	H1-hESC	embryonic stem cell:	n/a	n/a
6	HEY1	chr3:47866098-47867907	K562	blood:	n/a	chr3:47866496-47866511
7	NR2F2	chr3:47866119-47867973	K562	blood:	n/a	n/a
8	POLR2A	chr3:47867289-47867796	K562	blood:	n/a	n/a
9	POLR2A	chr3:47866101-47867771	K562	blood:	n/a	n/a
10	MAX	chr3:47867290-47867812	K562	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:47866553..47869509-chr3:48227817..48230002,2	K562	blood:
2	chr3:47864742..47870552-chr3:47891000..47894370,6	K562	blood:
3	chr3:47841394..47846517-chr3:47861978..47869167,10	MCF-7	breast:
4	chr3:47867196..47869240-chr3:47888577..47890321,2	MCF-7	breast:
5	chr3:47421585..47423707-chr3:47865885..47867908,2	K562	blood:
6	chr3:47865438..47868063-chr3:47949472..47951050,2	K562	blood:
7	chr3:47842553..47846144-chr3:47865369..47869227,6	MCF-7	breast:
8	chr3:47821721..47824833-chr3:47865723..47867890,4	K562	blood:
9	chr3:47867135..47871638-chr3:47884570..47887611,4	K562	blood:
10	chr3:47421478..47423085-chr3:47865885..47868776,2	K562	blood:
11	chr3:47843809..47846911-chr3:47863750..47868075,7	K562	blood:
12	chr3:47843874..47846988-chr3:47863750..47867904,4	K562	blood:
13	chr3:47819996..47824833-chr3:47866390..47869916,6	K562	blood:

No data

Variant related genes	Relation type
DHX30	TF binding region
ENSG00000132153	Chromatin interaction
ENSG00000076201	Chromatin interaction
ENSG00000164045	Chromatin interaction
ENSG00000260236	Chromatin interaction
ENSG00000221585	Chromatin interaction
ENSG00000173473	Chromatin interaction
ENSG00000047849	Chromatin interaction

Extended variants
information (count: 191 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs1013431	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs1060407	0.89[CEU][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap]
rs1061003	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10865948	0.84[AMR][1000 genomes]
rs11130143	0.83[AMR][1000 genomes]
rs11130144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs11130145	0.91[AMR][1000 genomes]
rs11130146	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11130147	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11130148	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130150	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130152	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs11130154	0.83[AFR][1000 genomes]
rs1137524	0.85[ASN][1000 genomes]
rs11707679	0.89[CEU][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap]
rs11708849	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11710199	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11712464	1.00[CEU][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11714942	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11716582	0.85[AMR][1000 genomes]
rs11927129	0.85[EUR][1000 genomes]
rs12492915	0.87[AMR][1000 genomes]
rs12495204	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12497921	0.87[AMR][1000 genomes]
rs12498027	0.90[AMR][1000 genomes]
rs12633604	0.89[AMR][1000 genomes]
rs12635438	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap]
rs12636863	0.83[AMR][1000 genomes]
rs13061412	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs13063042	0.94[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.93[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13064183	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13070035	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13074973	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs13075457	0.84[AFR][1000 genomes]
rs13075795	0.83[AFR][1000 genomes]
rs13077230	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13079407	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13081356	0.91[AMR][1000 genomes]
rs13086149	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13091913	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13094264	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13098128	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1403578	0.85[AMR][1000 genomes]
rs1403579	0.85[AMR][1000 genomes]
rs1464614	0.83[AMR][1000 genomes]
rs1486915	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1684942	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17079785	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17290490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs184388	0.83[ASN][1000 genomes]
rs2030596	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2047559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2049301	0.86[AMR][1000 genomes]
rs2053767	0.85[AFR][1000 genomes]
rs2101398	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2121754	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2133601	0.94[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.93[LWK][hapmap];0.92[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2140335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2166770	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs2293226	0.85[AMR][1000 genomes]
rs2351248	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs2631721	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28637561	0.85[AFR][1000 genomes]
rs2882611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs2882668	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs319680	0.90[AFR][1000 genomes]
rs319682	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.94[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs319684	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs319685	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs319686	0.85[ASN][1000 genomes]
rs319687	0.91[AFR][1000 genomes]
rs319689	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs319690	0.90[AFR][1000 genomes]
rs319691	0.88[AFR][1000 genomes]
rs319692	0.87[ASN][1000 genomes]
rs319693	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs319694	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs319695	0.89[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs319696	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34025851	0.85[ASN][1000 genomes]
rs34249203	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34351471	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34569417	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34777284	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34906469	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35148469	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35582375	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35698005	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732529	0.85[ASN][1000 genomes]
rs3755637	0.81[AMR][1000 genomes]
rs3755638	0.84[AMR][1000 genomes]
rs3772403	0.84[AMR][1000 genomes]
rs3888	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915654	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274776	0.83[AMR][1000 genomes]
rs4293721	0.83[AFR][1000 genomes]
rs4410463	0.86[AMR][1000 genomes]
rs4599334	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs4858801	0.85[AMR][1000 genomes]
rs4858803	0.83[AMR][1000 genomes]
rs4858810	0.81[CEU][hapmap]
rs4858842	0.85[AMR][1000 genomes]
rs4858846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes]
rs4858851	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4858853	0.89[EUR][1000 genomes]
rs4858857	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858860	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858863	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858871	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55823596	0.88[EUR][1000 genomes]
rs56376646	0.85[EUR][1000 genomes]
rs56746603	0.82[AMR][1000 genomes]
rs60110914	0.81[AMR][1000 genomes]
rs60446735	0.85[ASN][1000 genomes]
rs61181421	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61620099	0.85[AMR][1000 genomes]
rs62262129	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62263561	0.88[EUR][1000 genomes]
rs62263575	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6442072	0.83[AMR][1000 genomes]
rs6442074	0.90[AMR][1000 genomes]
rs6442079	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6442081	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6442082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.95[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6442083	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6442085	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6442086	0.91[EUR][1000 genomes]
rs6442090	0.85[AFR][1000 genomes]
rs6763824	0.81[TSI][hapmap]
rs6768699	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6770467	0.85[AFR][1000 genomes]
rs6770477	0.85[AFR][1000 genomes]
rs6772301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6772396	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6773467	0.86[AMR][1000 genomes]
rs6773732	0.86[AMR][1000 genomes]
rs6774170	0.84[AMR][1000 genomes]
rs6776963	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6777632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6783629	0.84[ASN][1000 genomes]
rs6785669	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6786001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6792350	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6792737	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6806860	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72906488	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73085151	0.88[EUR][1000 genomes]
rs7374516	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.94[TSI][hapmap]
rs7426976	0.84[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs7427418	0.94[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];0.98[LWK][hapmap];0.92[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7429162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes]
rs7430879	0.94[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7430913	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7612219	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7613934	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7618758	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7619882	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7621236	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7624474	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7627645	0.80[AFR][1000 genomes]
rs7629850	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631950	0.85[AMR][1000 genomes]
rs7637372	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7637950	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7638103	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7645846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7646982	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7649393	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7649981	0.85[AFR][1000 genomes]
rs7653368	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs777014	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs777015	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs796566	0.88[CEU][hapmap];0.85[ASN][1000 genomes]
rs800762	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs810334	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs868255	0.85[AMR][1000 genomes]
rs870622	0.85[AMR][1000 genomes]
rs883661	0.85[AMR][1000 genomes]
rs883663	0.82[AMR][1000 genomes]
rs9681917	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs9757517	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9811277	0.85[AFR][1000 genomes]
rs9812875	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9814961	0.85[AFR][1000 genomes]
rs9842649	0.82[ASN][1000 genomes]
rs9850154	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9862913	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv834679	chr3:47749475-47924006	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
3	nsv1006560	chr3:47867461-48037031	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs3772399	ZNF589	cis	cerebellum	SCAN
rs3772399	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs3772399	MRPS18AP1	cis	Nerve Tibial	GTEx
rs3772399	SMARCC1	cis	cerebellum	SCAN
rs3772399	HYAL2	cis	cerebellum	SCAN
rs3772399	ZNF589	cis	Nerve Tibial	GTEx
rs3772399	ZNF589	cis	Lymphoblastoid	GTEx
rs3772399	ZNF589	cis	parietal	SCAN
rs3772399	ZNF589	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47866000-47867800	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:47866000-47868000	Active TSS	A549	lung
3	chr3:47866200-47867800	Active TSS	iPS-18 Cell Line	embryonic stem cell
4	chr3:47866600-47868600	Transcr. at gene 5' and 3'	Dnd41	blood
5	chr3:47866800-47867800	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr3:47866800-47867800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr3:47866800-47867800	Flanking Active TSS	Adipose Nuclei	Adipose
8	chr3:47866800-47867800	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr3:47866800-47867800	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr3:47866800-47867800	Flanking Active TSS	Lung	lung
11	chr3:47866800-47868000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
12	chr3:47866800-47868000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr3:47867000-47867800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr3:47867000-47867800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
15	chr3:47867000-47867800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:47867000-47867800	Flanking Active TSS	Primary T cells from cord blood	blood
17	chr3:47867000-47867800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr3:47867000-47867800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
19	chr3:47867000-47867800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr3:47867000-47867800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
21	chr3:47867000-47867800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:47867000-47867800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr3:47867000-47867800	Flanking Active TSS	Brain Anterior Caudate	brain
24	chr3:47867000-47867800	Flanking Active TSS	Brain Cingulate Gyrus	brain
25	chr3:47867000-47867800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
26	chr3:47867000-47867800	Flanking Active TSS	Colonic Mucosa	Colon
27	chr3:47867000-47867800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr3:47867000-47867800	Flanking Active TSS	Fetal Lung	lung
29	chr3:47867000-47867800	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr3:47867000-47867800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr3:47867000-47867800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr3:47867000-47867800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr3:47867000-47867800	Flanking Active TSS	HUVEC	blood vessel
34	chr3:47867200-47867800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr3:47867200-47867800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:47867200-47867800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr3:47867200-47867800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr3:47867200-47867800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr3:47867200-47867800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
40	chr3:47867200-47867800	Flanking Active TSS	Fetal Intestine Large	intestine
41	chr3:47867200-47867800	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr3:47867200-47867800	Flanking Active TSS	Left Ventricle	heart
43	chr3:47867200-47867800	Enhancers	Placenta Amnion	Placenta Amnion
44	chr3:47867200-47867800	Flanking Active TSS	Rectal Smooth Muscle	rectum
45	chr3:47867200-47867800	Enhancers	Small Intestine	intestine
46	chr3:47867200-47867800	Flanking Active TSS	Stomach Smooth Muscle	stomach
47	chr3:47867200-47867800	Enhancers	Spleen	Spleen
48	chr3:47867200-47867800	Flanking Active TSS	HMEC	breast
49	chr3:47867200-47867800	Flanking Active TSS	NH-A	brain
50	chr3:47867200-47867800	Flanking Active TSS	NHDF-Ad	bronchial

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