Variant report

Variant	rs3915654
Chromosome Location	chr3:47868622-47868623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:47868585-47869289	K562	blood:	n/a	n/a
2	POLR2A	chr3:47862121-47869038	K562	blood:	n/a	n/a
3	POLR2A	chr3:47868554-47868694	HUVEC	blood vessel:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:47866553..47869509-chr3:48227817..48230002,2	K562	blood:
2	chr3:47864742..47870552-chr3:47891000..47894370,6	K562	blood:
3	chr3:47841394..47846517-chr3:47861978..47869167,10	MCF-7	breast:
4	chr3:47867196..47869240-chr3:47888577..47890321,2	MCF-7	breast:
5	chr3:47842553..47846144-chr3:47865369..47869227,6	MCF-7	breast:
6	chr3:47867135..47871638-chr3:47884570..47887611,4	K562	blood:
7	chr3:47421478..47423085-chr3:47865885..47868776,2	K562	blood:
8	chr3:47819996..47824833-chr3:47866390..47869916,6	K562	blood:
9	chr3:47868165..47871085-chr3:47888354..47890401,2	K562	blood:
10	chr3:47867869..47870552-chr3:47891035..47892717,2	K562	blood:

No data

Variant related genes	Relation type
DHX30	TF binding region
ENSG00000221585	Chromatin interaction
ENSG00000132153	Chromatin interaction
ENSG00000164045	Chromatin interaction
ENSG00000076201	Chromatin interaction
ENSG00000260236	Chromatin interaction
ENSG00000173473	Chromatin interaction

Extended variants
information (count: 191 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:188)

rs_ID	r²[population]
rs1013431	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs1060407	0.89[CEU][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap]
rs1061003	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10865948	0.84[AMR][1000 genomes]
rs11130143	0.83[AMR][1000 genomes]
rs11130144	0.83[AMR][1000 genomes]
rs11130145	0.91[AMR][1000 genomes]
rs11130146	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs11130147	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11130148	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130150	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130152	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs11130154	0.83[AFR][1000 genomes]
rs1137524	0.85[ASN][1000 genomes]
rs11707679	0.89[CEU][hapmap];0.94[JPT][hapmap];0.97[TSI][hapmap]
rs11708849	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11710199	0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11712464	1.00[CEU][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11714942	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11716582	0.85[AMR][1000 genomes]
rs11927129	0.85[EUR][1000 genomes]
rs12492915	0.87[AMR][1000 genomes]
rs12495204	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12497921	0.87[AMR][1000 genomes]
rs12498027	0.90[AMR][1000 genomes]
rs12633604	0.89[AMR][1000 genomes]
rs12635438	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];0.95[TSI][hapmap]
rs12636863	0.83[AMR][1000 genomes]
rs13061412	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs13063042	0.94[ASW][hapmap];1.00[CEU][hapmap];0.80[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs13064183	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13070035	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13074973	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs13075457	0.84[AFR][1000 genomes]
rs13075795	0.83[AFR][1000 genomes]
rs13077230	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13079407	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13081356	0.91[AMR][1000 genomes]
rs13086149	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13091913	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13094264	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13098128	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1403578	0.85[AMR][1000 genomes]
rs1403579	0.85[AMR][1000 genomes]
rs1464614	0.83[AMR][1000 genomes]
rs1486915	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1684942	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17079785	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17290490	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs184388	0.83[ASN][1000 genomes]
rs2030596	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2047559	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2049301	0.86[AMR][1000 genomes]
rs2053767	0.85[AFR][1000 genomes]
rs2101398	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2121754	0.85[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs2133601	0.94[ASW][hapmap];0.92[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];0.96[MKK][hapmap];0.87[TSI][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2140335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs2166770	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.86[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs2293226	0.85[AMR][1000 genomes]
rs2351248	0.82[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap]
rs2631721	0.90[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28637561	0.85[AFR][1000 genomes]
rs2882611	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes]
rs2882668	0.87[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs319680	0.90[AFR][1000 genomes]
rs319682	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.99[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs319684	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs319685	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs319686	0.85[ASN][1000 genomes]
rs319687	0.91[AFR][1000 genomes]
rs319689	0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs319690	0.90[AFR][1000 genomes]
rs319691	0.88[AFR][1000 genomes]
rs319692	0.87[ASN][1000 genomes]
rs319693	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs319694	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs319695	0.89[CEU][hapmap];0.83[CHB][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs319696	0.89[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34025851	0.85[ASN][1000 genomes]
rs34249203	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34351471	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34569417	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34777284	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34906469	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35148469	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35582375	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35698005	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3732529	0.85[ASN][1000 genomes]
rs3755637	0.81[AMR][1000 genomes]
rs3755638	0.84[AMR][1000 genomes]
rs3772399	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772403	0.84[AMR][1000 genomes]
rs3888	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4274776	0.83[AMR][1000 genomes]
rs4293721	0.83[AFR][1000 genomes]
rs4410463	0.86[AMR][1000 genomes]
rs4599334	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap]
rs4858801	0.85[AMR][1000 genomes]
rs4858803	0.83[AMR][1000 genomes]
rs4858810	0.81[CEU][hapmap]
rs4858842	0.85[AMR][1000 genomes]
rs4858846	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.90[AMR][1000 genomes]
rs4858851	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4858853	0.89[EUR][1000 genomes]
rs4858857	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858860	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4858863	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858871	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs55823596	0.88[EUR][1000 genomes]
rs56376646	0.85[EUR][1000 genomes]
rs56746603	0.82[AMR][1000 genomes]
rs60110914	0.81[AMR][1000 genomes]
rs60446735	0.85[ASN][1000 genomes]
rs61181421	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61620099	0.85[AMR][1000 genomes]
rs62262129	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs62263561	0.88[EUR][1000 genomes]
rs62263575	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6442072	0.83[AMR][1000 genomes]
rs6442074	0.90[AMR][1000 genomes]
rs6442079	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6442081	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6442082	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6442083	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6442085	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6442086	0.91[EUR][1000 genomes]
rs6442090	0.85[AFR][1000 genomes]
rs6763824	0.81[TSI][hapmap]
rs6768699	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6770467	0.85[AFR][1000 genomes]
rs6770477	0.85[AFR][1000 genomes]
rs6772301	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6772396	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs6773467	0.86[AMR][1000 genomes]
rs6773732	0.86[AMR][1000 genomes]
rs6774170	0.84[AMR][1000 genomes]
rs6776963	0.96[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6777632	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6783629	0.84[ASN][1000 genomes]
rs6785669	0.84[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6786001	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6792350	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6792497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6792737	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6806860	0.94[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72906488	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73085151	0.88[EUR][1000 genomes]
rs7374516	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.94[TSI][hapmap]
rs7426976	0.84[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]
rs7427418	0.94[ASW][hapmap];1.00[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];0.99[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes]
rs7429162	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes]
rs7430879	0.94[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs7430913	0.86[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs7612219	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7613934	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7618758	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7619882	0.86[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7621236	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7624474	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes]
rs7627645	0.80[AFR][1000 genomes]
rs7629850	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[CHD][hapmap];0.85[GIH][hapmap];0.94[JPT][hapmap];0.81[MEX][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7631950	0.85[AMR][1000 genomes]
rs7637372	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7637950	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7638103	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7645846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7646982	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs7649393	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7649981	0.85[AFR][1000 genomes]
rs7653368	0.88[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs777014	0.82[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs777015	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs796566	0.88[CEU][hapmap];0.85[ASN][1000 genomes]
rs800762	0.90[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs810334	0.94[ASW][hapmap];0.89[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs868255	0.85[AMR][1000 genomes]
rs870622	0.85[AMR][1000 genomes]
rs883661	0.85[AMR][1000 genomes]
rs883663	0.82[AMR][1000 genomes]
rs9681917	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap]
rs9757517	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9811277	0.85[AFR][1000 genomes]
rs9812875	0.83[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9814961	0.85[AFR][1000 genomes]
rs9842649	0.82[ASN][1000 genomes]
rs9850154	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9862913	0.84[ASW][hapmap];0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv834679	chr3:47749475-47924006	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
3	nsv1006560	chr3:47867461-48037031	Strong transcription Weak transcription Flanking Active TSS Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	141 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs3915654	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs3915654	ZNF589	cis	Nerve Tibial	GTEx
rs3915654	SMARCC1	cis	cerebellum	SCAN
rs3915654	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs3915654	ZNF589	cis	Lymphoblastoid	GTEx
rs3915654	HYAL2	cis	cerebellum	SCAN
rs3915654	ZNF589	cis	cerebellum	SCAN
rs3915654	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs3915654	ZNF589	cis	parietal	SCAN
rs3915654	MRPS18AP1	cis	Nerve Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47867400-47869400	Weak transcription	Esophagus	oesophagus
2	chr3:47867400-47870600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:47867600-47868800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:47867600-47868800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:47867600-47868800	Weak transcription	Fetal Kidney	kidney
6	chr3:47867600-47868800	Transcr. at gene 5' and 3'	NHEK	skin
7	chr3:47867600-47869000	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr3:47867600-47869600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr3:47867800-47868800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:47867800-47868800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr3:47867800-47868800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:47867800-47868800	Weak transcription	Primary B cells from cord blood	blood
13	chr3:47867800-47868800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr3:47867800-47868800	Weak transcription	Colonic Mucosa	Colon
15	chr3:47867800-47868800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr3:47867800-47868800	Weak transcription	Left Ventricle	heart
17	chr3:47867800-47868800	Weak transcription	Right Ventricle	heart
18	chr3:47867800-47868800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:47867800-47868800	Weak transcription	HSMMtube	muscle
20	chr3:47867800-47868800	Enhancers	HUVEC	blood vessel
21	chr3:47867800-47869000	Enhancers	Primary T helper naive cells from peripheral blood	blood
22	chr3:47867800-47869000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr3:47867800-47869000	Weak transcription	Gastric	stomach
24	chr3:47867800-47869000	Weak transcription	Lung	lung
25	chr3:47867800-47869000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:47867800-47869000	Weak transcription	Spleen	Spleen
27	chr3:47867800-47869600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr3:47867800-47869600	Weak transcription	Rectal Smooth Muscle	rectum
29	chr3:47867800-47873400	Weak transcription	Fetal Brain Male	brain
30	chr3:47867800-47882000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr3:47867800-47882000	Strong transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:47867800-47882400	Weak transcription	Small Intestine	intestine
33	chr3:47867800-47882400	Weak transcription	Stomach Mucosa	stomach
34	chr3:47867800-47882800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:47867800-47899200	Strong transcription	Fetal Brain Female	brain
36	chr3:47867800-47918800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:47868000-47868800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr3:47868000-47869000	Weak transcription	Primary hematopoietic stem cells	blood
39	chr3:47868000-47869000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr3:47868000-47869200	Genic enhancers	K562	blood
41	chr3:47868000-47870200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr3:47868000-47882200	Strong transcription	HUES64 Cell Line	embryonic stem cell
43	chr3:47868000-47882800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:47868000-47903000	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:47868000-47915200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:47868200-47868800	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
47	chr3:47868200-47871000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr3:47868200-47871400	Strong transcription	A549	lung
49	chr3:47868200-47872000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
50	chr3:47868200-47878600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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