Variant report

Variant	rs3772403
Chromosome Location	chr3:47616155-47616156
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:47606452..47609238-chr3:47614445..47617040,2	K562	blood:
2	chr3:47612398..47614279-chr3:47614350..47617253,3	K562	blood:
3	chr3:47614512..47616715-chr3:47621547..47623314,2	K562	blood:
4	chr3:47613245..47616715-chr3:47617848..47623047,5	K562	blood:

Variant related genes	Relation type
ENSG00000114646	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1014228	0.86[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs10865948	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130138	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11130139	0.83[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs11130143	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11130144	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11130145	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11130146	0.87[AMR][1000 genomes]
rs11130147	0.85[AMR][1000 genomes]
rs11130148	0.82[AMR][1000 genomes]
rs11712152	0.82[EUR][1000 genomes]
rs11714942	0.86[AMR][1000 genomes]
rs11716582	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11929303	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12489865	0.86[EUR][1000 genomes]
rs12492915	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12495204	0.86[AMR][1000 genomes]
rs12497921	0.87[AMR][1000 genomes]
rs12498027	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12633604	0.84[AMR][1000 genomes]
rs12636198	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12636863	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13061412	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13063042	0.85[AMR][1000 genomes]
rs13064183	0.86[AMR][1000 genomes]
rs13069142	0.84[EUR][1000 genomes]
rs13070035	0.82[AMR][1000 genomes]
rs13081356	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13084555	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13085978	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13086149	0.89[AMR][1000 genomes]
rs13091913	0.83[AMR][1000 genomes]
rs13094264	0.82[AMR][1000 genomes]
rs13098128	0.85[AMR][1000 genomes]
rs1403578	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1403579	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1464614	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1486915	0.85[AMR][1000 genomes]
rs17079785	0.86[AMR][1000 genomes]
rs2030596	0.87[AMR][1000 genomes]
rs2047559	0.87[AMR][1000 genomes]
rs2049300	0.85[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs2049301	0.82[AMR][1000 genomes]
rs2101398	0.80[AMR][1000 genomes]
rs2133601	0.85[AMR][1000 genomes]
rs2140335	0.87[AMR][1000 genomes]
rs2280567	0.95[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2293226	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2882611	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34252990	0.87[EUR][1000 genomes]
rs34351471	0.86[AMR][1000 genomes]
rs34569417	0.80[AMR][1000 genomes]
rs34616865	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs34777284	0.82[AMR][1000 genomes]
rs34906469	0.81[AMR][1000 genomes]
rs35148469	0.86[AMR][1000 genomes]
rs35167544	0.90[EUR][1000 genomes]
rs35698005	0.87[AMR][1000 genomes]
rs36033865	0.86[EUR][1000 genomes]
rs3732530	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs3755637	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755638	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3772399	0.84[AMR][1000 genomes]
rs3888	0.81[AMR][1000 genomes]
rs3915654	0.84[AMR][1000 genomes]
rs4274776	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4410463	0.82[AMR][1000 genomes]
rs4858801	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858803	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4858835	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4858836	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4858842	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4858846	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4858851	0.82[AMR][1000 genomes]
rs4858857	0.85[AMR][1000 genomes]
rs4858860	0.81[AMR][1000 genomes]
rs56746603	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60110914	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60322343	0.97[EUR][1000 genomes]
rs61181421	0.85[AMR][1000 genomes]
rs61620099	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61675361	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62262129	0.84[AMR][1000 genomes]
rs62263575	0.81[AMR][1000 genomes]
rs6442070	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6442071	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6442072	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6442074	0.85[AMR][1000 genomes]
rs6442081	0.82[AMR][1000 genomes]
rs6442082	0.86[AMR][1000 genomes]
rs6442083	0.86[AMR][1000 genomes]
rs6442085	0.85[AMR][1000 genomes]
rs6767896	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6767996	0.82[AMR][1000 genomes]
rs6768699	0.86[AMR][1000 genomes]
rs6772301	0.85[AMR][1000 genomes]
rs6773467	0.82[AMR][1000 genomes]
rs6773732	0.82[AMR][1000 genomes]
rs6774170	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6777632	0.87[AMR][1000 genomes]
rs6780395	0.84[AMR][1000 genomes]
rs6782707	0.80[EUR][1000 genomes]
rs6784946	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6785031	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6785669	0.81[AMR][1000 genomes]
rs6786001	0.86[AMR][1000 genomes]
rs6789835	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6792350	0.84[AMR][1000 genomes]
rs6792497	0.84[AMR][1000 genomes]
rs6792737	0.86[AMR][1000 genomes]
rs6806860	0.86[AMR][1000 genomes]
rs72906488	0.83[AMR][1000 genomes]
rs7429162	0.82[AMR][1000 genomes]
rs7612219	0.86[AMR][1000 genomes]
rs7613934	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7618758	0.86[AMR][1000 genomes]
rs7621236	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7624474	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7631950	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7637372	0.87[AMR][1000 genomes]
rs7637950	0.84[AMR][1000 genomes]
rs7638103	0.82[AMR][1000 genomes]
rs7642691	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7645846	0.86[AMR][1000 genomes]
rs7646982	0.81[AMR][1000 genomes]
rs7649393	0.82[AMR][1000 genomes]
rs868255	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs869508	0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs870622	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883661	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs883662	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs883663	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9757517	0.83[AMR][1000 genomes]
rs9820051	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs3772403	MRPS18AP1	cis	Nerve Tibial	GTEx
rs3772403	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs3772403	MRPS18AP1	cis	lung	GTEx
rs3772403	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs3772403	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs3772403	ZNF589	cis	Nerve Tibial	GTEx
rs3772403	NME6	cis	Esophagus Muscularis	GTEx

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47608600-47618200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:47612000-47616400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr3:47612800-47617200	Enhancers	Fetal Brain Male	brain
4	chr3:47615000-47616600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr3:47615200-47618200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr3:47615400-47616800	Weak transcription	Brain Germinal Matrix	brain
7	chr3:47615400-47617800	Weak transcription	Fetal Brain Female	brain
8	chr3:47615600-47616800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr3:47615600-47618800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr3:47615800-47616400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr3:47615800-47618200	Weak transcription	Brain Angular Gyrus	brain
12	chr3:47615800-47618200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:47615800-47618400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr3:47615800-47619000	Weak transcription	Left Ventricle	heart
15	chr3:47616000-47616800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr3:47616000-47616800	Weak transcription	Brain Hippocampus Middle	brain
17	chr3:47616000-47618400	Weak transcription	Brain Cingulate Gyrus	brain
18	chr3:47616000-47618600	Weak transcription	Brain Anterior Caudate	brain
19	chr3:47616000-47619000	Weak transcription	Brain Substantia Nigra	brain

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