Variant report

Variant	rs6789835
Chromosome Location	chr3:47592859-47592860
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47582813..47585276-chr3:47590565..47592915,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1014228	0.83[EUR][1000 genomes]
rs10865948	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11130138	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11130139	0.90[EUR][1000 genomes]
rs11130143	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11130144	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11130147	0.81[AMR][1000 genomes]
rs11130148	0.82[AMR][1000 genomes]
rs11716582	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11929303	0.84[EUR][1000 genomes]
rs12492915	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12497921	0.81[AMR][1000 genomes]
rs12498027	0.81[AMR][1000 genomes]
rs12636198	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12636863	0.81[AMR][1000 genomes]
rs13061412	0.82[AMR][1000 genomes]
rs13084555	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13085978	0.86[EUR][1000 genomes]
rs13091913	0.81[AMR][1000 genomes]
rs13094264	0.82[AMR][1000 genomes]
rs1403578	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1403579	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1464614	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1486915	0.83[AMR][1000 genomes]
rs2030596	0.81[AMR][1000 genomes]
rs2047559	0.81[AMR][1000 genomes]
rs2049301	0.82[AMR][1000 genomes]
rs2280567	0.89[EUR][1000 genomes]
rs2293226	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2882611	0.85[AMR][1000 genomes]
rs34616865	0.83[EUR][1000 genomes]
rs34777284	0.82[AMR][1000 genomes]
rs35167544	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35533636	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3732530	0.89[EUR][1000 genomes]
rs3755637	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3755638	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3772403	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4274776	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4410463	0.82[AMR][1000 genomes]
rs4858801	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4858835	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858836	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4858842	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4858846	0.81[AMR][1000 genomes]
rs4858851	0.82[AMR][1000 genomes]
rs56746603	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs60110914	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60322343	0.89[EUR][1000 genomes]
rs60992717	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61620099	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61675361	0.86[EUR][1000 genomes]
rs6442070	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6442071	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6442072	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6767896	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6767996	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6773467	0.82[AMR][1000 genomes]
rs6773732	0.82[AMR][1000 genomes]
rs6774170	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6780080	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6780395	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6782707	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6784946	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6785031	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6785669	0.81[AMR][1000 genomes]
rs6792350	0.82[AMR][1000 genomes]
rs7429162	0.82[AMR][1000 genomes]
rs7613934	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7621236	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7624474	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7631950	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7638103	0.82[AMR][1000 genomes]
rs7642691	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7649393	0.82[AMR][1000 genomes]
rs868255	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs869508	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs870622	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs883661	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs883662	0.83[EUR][1000 genomes]
rs883663	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9311409	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9757517	0.81[AMR][1000 genomes]
rs9820051	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835605	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs6789835	MRPS18AP1	cis	Artery Tibial	GTEx
rs6789835	ZNF589	cis	Nerve Tibial	GTEx
rs6789835	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs6789835	NME6	cis	Esophagus Muscularis	GTEx
rs6789835	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs6789835	MRPS18AP1	cis	lung	GTEx
rs6789835	MRPS18AP1	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47584200-47607800	Weak transcription	Brain Germinal Matrix	brain

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