Variant report

Variant	rs9311409
Chromosome Location	chr3:47590420-47590421
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10865948	0.82[AMR][1000 genomes]
rs11130138	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11716582	0.81[AMR][1000 genomes]
rs11917071	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13084555	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2293226	0.81[AMR][1000 genomes]
rs35167544	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35533636	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3755637	0.83[AMR][1000 genomes]
rs4858801	0.81[AMR][1000 genomes]
rs4858835	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4858836	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60110914	0.81[AMR][1000 genomes]
rs60992717	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61620099	0.81[AMR][1000 genomes]
rs6442070	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6442071	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6767896	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6767996	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6780080	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6780395	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6782707	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6784946	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6785031	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6789835	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7631950	0.81[AMR][1000 genomes]
rs7642691	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9820051	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9835605	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs9311409	MRPS18AP1	cis	Artery Tibial	GTEx
rs9311409	NME6	cis	Esophagus Muscularis	GTEx
rs9311409	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs9311409	ZNF589	cis	Artery Tibial	GTEx
rs9311409	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs9311409	ZNF589	cis	Nerve Tibial	GTEx
rs9311409	MRPS18AP1	cis	Nerve Tibial	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47584200-47607800	Weak transcription	Brain Germinal Matrix	brain

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