Variant report

Variant	rs6792737
Chromosome Location	chr3:47774348-47774349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:47769268..47771270-chr3:47773240..47775597,2	K562	blood:
2	chr3:47772712..47775142-chr3:47820801..47823649,2	K562	blood:

Variant related genes	Relation type
ENSG00000173473	Chromatin interaction

Extended variants
information (count: 134 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10865948	0.86[AMR][1000 genomes]
rs11130138	0.82[AMR][1000 genomes]
rs11130143	0.90[AMR][1000 genomes]
rs11130144	0.90[AMR][1000 genomes]
rs11130145	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11130146	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11130147	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11130148	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11130150	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11707707	0.85[EUR][1000 genomes]
rs11708849	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11710199	0.80[AFR][1000 genomes]
rs11712464	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11714942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11716582	0.87[AMR][1000 genomes]
rs11927129	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12492915	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12495204	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12497921	0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12498027	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12633604	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12635438	0.89[EUR][1000 genomes]
rs12636863	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13061412	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13063042	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13064183	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13070035	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13077230	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13079407	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs13081356	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13084555	0.81[AMR][1000 genomes]
rs13086149	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13091913	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13094264	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13098128	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1403578	0.92[AMR][1000 genomes]
rs1403579	0.92[AMR][1000 genomes]
rs1464614	0.90[AMR][1000 genomes]
rs1486915	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17079785	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17290490	0.80[AFR][1000 genomes]
rs2030596	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2047559	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2049301	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2101398	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2133601	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2140335	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2293226	0.87[AMR][1000 genomes]
rs2351248	0.82[ASN][1000 genomes]
rs2882611	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs319694	0.80[AFR][1000 genomes]
rs34351471	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34569417	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34777284	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34906469	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35148469	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35582375	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35664069	0.87[EUR][1000 genomes]
rs35698005	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3755637	0.83[AMR][1000 genomes]
rs3755638	0.86[AMR][1000 genomes]
rs3772399	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3772403	0.86[AMR][1000 genomes]
rs3888	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3915654	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4274776	0.85[AMR][1000 genomes]
rs4410463	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4858801	0.87[AMR][1000 genomes]
rs4858803	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4858836	0.82[AMR][1000 genomes]
rs4858842	0.92[AMR][1000 genomes]
rs4858846	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4858851	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4858853	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4858857	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4858860	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4858863	0.84[EUR][1000 genomes]
rs55823596	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56376646	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56746603	0.84[AMR][1000 genomes]
rs60110914	0.83[AMR][1000 genomes]
rs61181421	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61620099	0.87[AMR][1000 genomes]
rs62262129	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62263561	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62263575	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6442072	0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6442074	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6442079	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6442081	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6442082	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6442083	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6442085	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6442086	0.86[EUR][1000 genomes]
rs6768699	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6772301	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6773467	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6773732	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6774170	0.91[AMR][1000 genomes]
rs6776963	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6777632	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6782998	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6785031	0.82[AMR][1000 genomes]
rs6785669	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6786001	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6792350	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6792497	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6806860	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72906474	0.81[ASN][1000 genomes]
rs72906488	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73085151	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7429162	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7612219	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7613934	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7618758	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7621236	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7624474	0.94[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7629850	0.84[EUR][1000 genomes]
rs7631950	0.87[AMR][1000 genomes]
rs7637372	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7637950	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7638103	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7645846	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7646982	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7649393	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs868255	0.92[AMR][1000 genomes]
rs870622	0.92[AMR][1000 genomes]
rs883661	0.92[AMR][1000 genomes]
rs883663	0.88[AMR][1000 genomes]
rs9757517	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003072	chr3:47673628-47869154	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
2	nsv876758	chr3:47681881-47842234	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	25 gene(s)	inside rSNPs	diseases
3	nsv876759	chr3:47725315-47830741	Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	24 gene(s)	inside rSNPs	diseases
4	nsv834679	chr3:47749475-47924006	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs6792737	MRPS18AP1	cis	Nerve Tibial	GTEx
rs6792737	MAP4	Cis_1M	lymphoblastoid	RTeQTL
rs6792737	DHX30	Cis_1M	lymphoblastoid	RTeQTL
rs6792737	MRPS18AP1	cis	Muscle Skeletal	GTEx
rs6792737	ZNF589	cis	Nerve Tibial	GTEx

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:47656600-47790800	Strong transcription	Fetal Thymus	thymus
2	chr3:47701600-47800400	Strong transcription	Dnd41	blood
3	chr3:47701600-47819800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:47702200-47790400	Strong transcription	HUES64 Cell Line	embryonic stem cell
5	chr3:47704000-47788600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:47707200-47780800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr3:47707200-47781400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr3:47727600-47819400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr3:47738200-47779600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr3:47742000-47779600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr3:47744400-47776800	Weak transcription	Esophagus	oesophagus
12	chr3:47746000-47779200	Strong transcription	Cortex derived primary cultured neurospheres	brain
13	chr3:47748400-47790600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr3:47753200-47775400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr3:47755600-47775600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:47755800-47774400	Weak transcription	Colonic Mucosa	Colon
17	chr3:47755800-47776200	Weak transcription	Aorta	Aorta
18	chr3:47756000-47775600	Weak transcription	Brain Angular Gyrus	brain
19	chr3:47757200-47776200	Weak transcription	Brain Hippocampus Middle	brain
20	chr3:47757200-47784600	Weak transcription	Right Atrium	heart
21	chr3:47758600-47776800	Weak transcription	NHLF	lung
22	chr3:47758800-47779800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr3:47761600-47775600	Weak transcription	Brain Anterior Caudate	brain
24	chr3:47761600-47776000	Weak transcription	Right Ventricle	heart
25	chr3:47761800-47776000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr3:47761800-47776200	Weak transcription	Gastric	stomach
27	chr3:47762200-47775600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:47763000-47777600	Strong transcription	HSMM	muscle
29	chr3:47764200-47775200	Strong transcription	Fetal Muscle Leg	muscle
30	chr3:47764200-47777800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr3:47764200-47779000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
32	chr3:47764200-47779800	Strong transcription	Liver	Liver
33	chr3:47764400-47778000	Strong transcription	HepG2	liver
34	chr3:47764600-47776600	Weak transcription	Stomach Mucosa	stomach
35	chr3:47765400-47779200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr3:47765600-47779200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr3:47765600-47779400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr3:47765600-47780000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:47765600-47780800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr3:47765800-47778800	Strong transcription	Thymus	Thymus
41	chr3:47765800-47779400	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr3:47765800-47789400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr3:47766000-47775200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr3:47766000-47777600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr3:47766000-47779400	Strong transcription	Fetal Intestine Large	intestine
46	chr3:47766000-47779600	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr3:47766000-47781600	Strong transcription	HUES6 Cell Line	embryonic stem cell
48	chr3:47766200-47777600	Strong transcription	Fetal Stomach	stomach
49	chr3:47766200-47780000	Strong transcription	HUES48 Cell Line	embryonic stem cell
50	chr3:47766200-47788600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell

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