Variant report

Variant	rs3744857
Chromosome Location	chr18:43845780-43845781
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs58195962	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58510983	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58555089	0.81[ASN][1000 genomes]
rs58733901	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59332342	0.91[ASN][1000 genomes]
rs59343315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59640392	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59898569	1.00[ASN][1000 genomes]
rs59904633	1.00[ASN][1000 genomes]
rs59915699	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60048649	1.00[ASN][1000 genomes]
rs60510203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60902296	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61654407	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7229101	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229594	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7229605	0.96[ASN][1000 genomes]
rs7239202	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs7244399	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425133	0.81[ASN][1000 genomes]
rs73425152	1.00[ASN][1000 genomes]
rs73425154	1.00[ASN][1000 genomes]
rs73425163	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425165	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73425173	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73956290	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9954145	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43826600-43847000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr18:43830000-43854200	Weak transcription	Esophagus	oesophagus
3	chr18:43830600-43847400	Weak transcription	Pancreas	Pancrea
4	chr18:43831000-43851400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr18:43831400-43848000	Weak transcription	Fetal Kidney	kidney
6	chr18:43831400-43863200	Weak transcription	Fetal Intestine Small	intestine
7	chr18:43833800-43856800	Weak transcription	Aorta	Aorta
8	chr18:43834800-43849000	Weak transcription	HUVEC	blood vessel
9	chr18:43840000-43846000	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr18:43840000-43846000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr18:43840000-43853600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr18:43840600-43846400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr18:43840600-43850600	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr18:43840800-43846000	Weak transcription	A549	lung
15	chr18:43841000-43846000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr18:43841000-43861400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr18:43841000-43864200	Weak transcription	Brain Cingulate Gyrus	brain
18	chr18:43841200-43847400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:43841200-43847400	Strong transcription	Primary B cells from cord blood	blood
20	chr18:43841200-43849600	Strong transcription	Dnd41	blood
21	chr18:43841400-43845800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr18:43841400-43858000	Weak transcription	HSMMtube	muscle
23	chr18:43841400-43858400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr18:43842000-43846000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr18:43842000-43848800	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr18:43842200-43849200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr18:43842200-43852000	Weak transcription	Colonic Mucosa	Colon
28	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr18:43842400-43846000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr18:43842400-43846200	Enhancers	HUES6 Cell Line	embryonic stem cell
31	chr18:43842400-43846200	Strong transcription	Primary B cells from peripheral blood	blood
32	chr18:43842600-43845800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr18:43842600-43846000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr18:43842600-43846000	Strong transcription	Thymus	Thymus
35	chr18:43842600-43846600	Strong transcription	Duodenum Mucosa	Duodenum
36	chr18:43842800-43846000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr18:43842800-43846000	Strong transcription	Fetal Lung	lung
38	chr18:43843000-43846000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr18:43843200-43845800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
40	chr18:43843200-43846200	Weak transcription	Brain Angular Gyrus	brain
41	chr18:43843200-43850600	Weak transcription	Brain Substantia Nigra	brain
42	chr18:43843200-43852200	Weak transcription	Gastric	stomach
43	chr18:43843200-43855200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr18:43843600-43858200	Weak transcription	K562	blood
45	chr18:43843800-43845800	Enhancers	Muscle Satellite Cultured Cells	--
46	chr18:43843800-43846000	Enhancers	H1 Cell Line	embryonic stem cell
47	chr18:43844000-43845800	Weak transcription	Right Ventricle	heart
48	chr18:43844000-43846000	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr18:43844000-43847600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr18:43844000-43857600	Weak transcription	Fetal Muscle Trunk	muscle

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