Variant report

Variant	rs9954145
Chromosome Location	chr18:43863922-43863923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs3744857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58195962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58510983	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58733901	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59332342	0.95[ASN][1000 genomes]
rs59343315	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59640392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59898569	0.86[ASN][1000 genomes]
rs59904633	0.86[ASN][1000 genomes]
rs59915699	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60048649	0.86[ASN][1000 genomes]
rs60510203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60902296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7229101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7229594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7229605	0.82[ASN][1000 genomes]
rs7239202	0.86[ASN][1000 genomes]
rs7244399	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73425152	0.86[ASN][1000 genomes]
rs73425154	0.86[ASN][1000 genomes]
rs73425163	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73425165	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73425173	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73956290	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43841000-43864200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr18:43852200-43879000	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr18:43853000-43877800	Weak transcription	Primary T cells from cord blood	blood
5	chr18:43857000-43877800	Weak transcription	Aorta	Aorta
6	chr18:43859200-43869400	Weak transcription	Left Ventricle	heart
7	chr18:43860400-43873000	Weak transcription	Fetal Heart	heart
8	chr18:43861400-43864400	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr18:43861400-43864400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr18:43861400-43864600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:43861400-43864600	Enhancers	Hela-S3	cervix
12	chr18:43861800-43864800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:43862400-43870200	Weak transcription	Liver	Liver
14	chr18:43862600-43864400	Enhancers	Fetal Muscle Leg	muscle
15	chr18:43862800-43864400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr18:43863000-43864200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr18:43863000-43864200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr18:43863000-43864200	Enhancers	Psoas Muscle	Psoas
19	chr18:43863000-43864400	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr18:43863000-43864400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr18:43863000-43864400	Enhancers	Fetal Muscle Trunk	muscle
22	chr18:43863000-43864600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr18:43863200-43864000	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr18:43863200-43864000	Enhancers	Fetal Intestine Small	intestine
25	chr18:43863200-43864200	Enhancers	iPS-15b Cell Line	embryonic stem cell
26	chr18:43863200-43864400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr18:43863200-43864400	Enhancers	H1 Cell Line	embryonic stem cell
28	chr18:43863200-43864400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr18:43863200-43864400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr18:43863200-43864400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr18:43863200-43864600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr18:43863400-43864000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr18:43863400-43864200	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr18:43863600-43864400	Enhancers	H9 Cell Line	embryonic stem cell
35	chr18:43863600-43870600	Weak transcription	Spleen	Spleen

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