Variant report

Variant	rs73956290
Chromosome Location	chr18:43864265-43864266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs3744857	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55653339	0.83[AFR][1000 genomes]
rs58195962	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58510983	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58733901	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59332342	0.93[ASN][1000 genomes]
rs59343315	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs59640392	1.00[EUR][1000 genomes]
rs59898569	0.84[ASN][1000 genomes]
rs59904633	0.84[ASN][1000 genomes]
rs59915699	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60048649	0.84[ASN][1000 genomes]
rs60510203	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60902296	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7229101	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7229594	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7229605	0.80[ASN][1000 genomes]
rs7239202	0.84[ASN][1000 genomes]
rs7244399	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73425152	0.84[ASN][1000 genomes]
rs73425154	0.84[ASN][1000 genomes]
rs73425163	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73425165	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73425173	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73956289	0.83[AFR][1000 genomes]
rs9954145	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064031	chr18:43782309-43878806	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43842200-43869800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr18:43852200-43879000	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr18:43853000-43877800	Weak transcription	Primary T cells from cord blood	blood
4	chr18:43857000-43877800	Weak transcription	Aorta	Aorta
5	chr18:43859200-43869400	Weak transcription	Left Ventricle	heart
6	chr18:43860400-43873000	Weak transcription	Fetal Heart	heart
7	chr18:43861400-43864400	Enhancers	Skeletal Muscle Male	skeletal muscle
8	chr18:43861400-43864400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr18:43861400-43864600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr18:43861400-43864600	Enhancers	Hela-S3	cervix
11	chr18:43861800-43864800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr18:43862400-43870200	Weak transcription	Liver	Liver
13	chr18:43862600-43864400	Enhancers	Fetal Muscle Leg	muscle
14	chr18:43862800-43864400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr18:43863000-43864400	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr18:43863000-43864400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:43863000-43864400	Enhancers	Fetal Muscle Trunk	muscle
18	chr18:43863000-43864600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr18:43863200-43864400	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr18:43863200-43864400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr18:43863200-43864400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr18:43863200-43864400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr18:43863200-43864400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr18:43863200-43864600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr18:43863600-43864400	Enhancers	H9 Cell Line	embryonic stem cell
26	chr18:43863600-43870600	Weak transcription	Spleen	Spleen
27	chr18:43864200-43869000	Weak transcription	Psoas Muscle	Psoas

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