Variant report

Variant	rs376008064
Chromosome Location	chr10:42365435-42365436
allele	-/GTTCCATTCCA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:53 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3336598	chr10:42354936-42422444	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3350084	chr10:42354936-42422444	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3342799	chr10:42354936-42422544	Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1003224	chr10:42354975-42392945	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv14242	chr10:42354975-42396556	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv820572	chr10:42354975-42398230	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	esv4487	chr10:42355008-42382881	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
8	esv7049	chr10:42355088-42382895	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
9	esv7235	chr10:42355383-42380289	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
10	esv3331946	chr10:42355702-42380334	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
11	nsv438169	chr10:42356543-42365676	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
12	nsv550585	chr10:42356543-42366669	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
13	nsv550586	chr10:42356543-42380352	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
14	nsv550587	chr10:42356543-42381319	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
15	nsv550588	chr10:42356543-42382176	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
16	nsv437111	chr10:42356543-42386271	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv437112	chr10:42356543-42386271	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv437114	chr10:42356543-42386271	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
19	nsv437115	chr10:42356543-42386271	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv550589	chr10:42356543-42388730	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
21	nsv437666	chr10:42356543-42397929	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
22	nsv550590	chr10:42356543-42401249	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv550591	chr10:42356543-42407506	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv550592	chr10:42356543-42421485	ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
25	nsv550593	chr10:42356543-42445174	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
26	esv3490714	chr10:42356621-42369399	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
27	esv3490715	chr10:42356621-42369399	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
28	esv7622	chr10:42356789-42379940	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
29	nsv437667	chr10:42357770-42397929	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	esv9480	chr10:42357963-42380297	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
31	esv8830	chr10:42357976-42380828	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
32	esv6338	chr10:42358188-42381770	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
33	esv3378675	chr10:42358284-42379797	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
34	esv3348731	chr10:42358643-42382653	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
35	esv8769	chr10:42358785-42379751	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
36	esv8665	chr10:42358796-42380608	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
37	esv2829922	chr10:42359820-42382515	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
38	nsv550594	chr10:42359820-42383019	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
39	esv9613	chr10:42361401-42380293	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
40	esv3355789	chr10:42361561-42368125	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
41	esv9515	chr10:42361995-42374303	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
42	esv8595	chr10:42362437-42380286	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
43	nsv550595	chr10:42362711-42383019	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
44	nsv550596	chr10:42362711-42467126	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
45	nsv550597	chr10:42363131-42382515	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
46	nsv550598	chr10:42363131-42401249	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
47	esv8833	chr10:42363941-42380493	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
48	esv5486	chr10:42364303-42380648	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
49	esv7641	chr10:42364753-42380289	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases
50	esv5619	chr10:42364755-42380648	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42354800-42366400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:42354800-42367200	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr10:42354800-42367200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr10:42354800-42367200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
5	chr10:42354800-42367400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
6	chr10:42354800-42367400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr10:42354800-42367400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
8	chr10:42354800-42367400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
9	chr10:42354800-42368000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:42354800-42368000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
11	chr10:42355000-42365600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
12	chr10:42355000-42365600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
13	chr10:42355000-42365600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:42355000-42365600	ZNF genes & repeats	Primary B cells from cord blood	blood
15	chr10:42355000-42365600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
16	chr10:42355000-42365600	ZNF genes & repeats	Aorta	Aorta
17	chr10:42355000-42365600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr10:42355000-42365600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
19	chr10:42355000-42365600	ZNF genes & repeats	Stomach Mucosa	stomach
20	chr10:42355000-42365600	ZNF genes & repeats	GM12878-XiMat	blood
21	chr10:42355000-42365600	ZNF genes & repeats	HepG2	liver
22	chr10:42355000-42365600	ZNF genes & repeats	HSMMtube	muscle
23	chr10:42355000-42365600	ZNF genes & repeats	HUVEC	blood vessel
24	chr10:42355000-42365800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
25	chr10:42355000-42365800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
26	chr10:42355000-42365800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr10:42355000-42365800	ZNF genes & repeats	Fetal Heart	heart
28	chr10:42355000-42365800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
29	chr10:42355000-42365800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
30	chr10:42355000-42365800	ZNF genes & repeats	K562	blood
31	chr10:42355000-42365800	ZNF genes & repeats	NH-A	brain
32	chr10:42355000-42366000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr10:42355000-42366000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr10:42355000-42366000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
36	chr10:42355000-42366000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
37	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
38	chr10:42355000-42366000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
39	chr10:42355000-42366000	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr10:42355000-42366000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
41	chr10:42355000-42366000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
42	chr10:42355000-42366000	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
43	chr10:42355000-42366000	ZNF genes & repeats	Brain Substantia Nigra	brain
44	chr10:42355000-42366000	ZNF genes & repeats	Colon Smooth Muscle	Colon
45	chr10:42355000-42366000	ZNF genes & repeats	Pancreas	Pancrea
46	chr10:42355000-42366000	ZNF genes & repeats	A549	lung
47	chr10:42355000-42366200	ZNF genes & repeats	Primary T cells from cord blood	blood
48	chr10:42355000-42366200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
49	chr10:42355000-42366200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr10:42355000-42366200	ZNF genes & repeats	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links