Variant report

Variant	rs3915086
Chromosome Location	chr7:27478649-27478650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27476223..27478695-chr7:27480805..27482916,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10241677	0.84[CEU][hapmap]
rs10242634	0.96[ASN][1000 genomes]
rs10252511	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10252636	0.94[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10268623	0.85[ASN][1000 genomes]
rs10269160	0.98[ASN][1000 genomes]
rs10272561	0.94[ASN][1000 genomes]
rs10276795	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10276966	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs1112620	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11763775	0.85[ASN][1000 genomes]
rs12540319	0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.87[YRI][hapmap];0.94[ASN][1000 genomes]
rs1524522	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989910	0.86[ASN][1000 genomes]
rs2074340	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2074341	0.94[ASN][1000 genomes]
rs28418930	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs28625460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3915089	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs4141138	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4722699	0.83[AMR][1000 genomes]
rs4722700	1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4722702	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4722706	0.81[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4722707	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs56843699	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454789	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs62454790	0.92[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs6953785	0.94[ASN][1000 genomes]
rs6957243	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs757141	0.86[ASN][1000 genomes]
rs7786854	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7792305	0.84[AFR][1000 genomes]
rs9691111	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27475800-27481600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:27478400-27479000	Enhancers	Liver	Liver

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