Variant report

Variant	rs4141138
Chromosome Location	chr7:27475381-27475382
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27468218..27471547-chr7:27472130..27475962,5	K562	blood:
2	chr7:27470047..27472027-chr7:27474314..27477072,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10242634	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10252511	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10252636	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10268623	0.86[ASN][1000 genomes]
rs10269160	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10272441	0.84[EUR][1000 genomes]
rs10272561	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10272948	0.90[EUR][1000 genomes]
rs10276795	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1112620	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11763775	0.86[ASN][1000 genomes]
rs12540319	0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs1476538	0.90[EUR][1000 genomes]
rs1524522	0.93[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1989910	0.87[ASN][1000 genomes]
rs2074340	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2074341	0.95[ASN][1000 genomes]
rs28418930	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28625460	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3915086	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3915089	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4719892	0.88[CEU][hapmap];0.85[EUR][1000 genomes]
rs4722698	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs4722700	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4722702	1.00[CHB][hapmap];0.88[JPT][hapmap];0.91[ASN][1000 genomes]
rs4722706	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4722707	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56843699	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs62454765	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62454789	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62454790	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6953785	0.95[ASN][1000 genomes]
rs757141	0.87[ASN][1000 genomes]
rs7786854	0.85[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7792305	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9691111	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27474000-27475800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:27474000-27476400	Weak transcription	Spleen	Spleen
3	chr7:27474200-27475800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr7:27474400-27475400	Enhancers	Fetal Stomach	stomach
5	chr7:27474400-27475800	Enhancers	Osteobl	bone
6	chr7:27474600-27475600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:27475000-27475400	Enhancers	NHDF-Ad	bronchial
8	chr7:27475200-27475400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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