Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27462153..27463834-chr7:27472462..27475213,2	MCF-7	breast:
2	chr7:27468218..27471547-chr7:27472130..27475962,5	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10242634	0.91[EUR][1000 genomes]
rs10252511	0.90[EUR][1000 genomes]
rs10252636	0.90[EUR][1000 genomes]
rs10269160	0.90[EUR][1000 genomes]
rs10272441	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10272561	0.85[EUR][1000 genomes]
rs10272948	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276795	0.90[EUR][1000 genomes]
rs1112620	0.90[EUR][1000 genomes]
rs11762257	1.00[ASN][1000 genomes]
rs2074340	0.90[EUR][1000 genomes]
rs28418930	0.90[EUR][1000 genomes]
rs28668661	1.00[ASN][1000 genomes]
rs3915089	0.90[EUR][1000 genomes]
rs4141138	0.90[EUR][1000 genomes]
rs4719892	0.86[CEU][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722698	0.86[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4722700	0.87[EUR][1000 genomes]
rs4722706	0.90[EUR][1000 genomes]
rs4722707	0.90[EUR][1000 genomes]
rs62454765	0.85[EUR][1000 genomes]
rs62454789	0.90[EUR][1000 genomes]
rs62454790	0.90[EUR][1000 genomes]
rs62454832	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27466200-27473800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27469800-27473000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:27470800-27473200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:27471600-27474200	Enhancers	H1 Cell Line	embryonic stem cell
5	chr7:27472000-27473200	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:27472000-27474200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr7:27472000-27474400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:27472000-27475200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr7:27472200-27473200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:27472200-27473800	Weak transcription	Spleen	Spleen
11	chr7:27472800-27473600	Enhancers	Brain Germinal Matrix	brain
12	chr7:27472800-27474800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:27472800-27475200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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