Variant report

Variant	rs2074340
Chromosome Location	chr7:27464977-27464978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27386607..27388873-chr7:27463888..27465828,2	MCF-7	breast:
2	chr7:27275263..27277588-chr7:27463038..27465057,2	MCF-7	breast:
3	chr7:27464749..27467549-chr7:27483930..27485742,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10242634	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10252511	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10252636	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10268623	0.86[ASN][1000 genomes]
rs10269160	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10272441	0.83[EUR][1000 genomes]
rs10272561	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10272948	0.89[EUR][1000 genomes]
rs10276795	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1112620	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11763775	0.86[ASN][1000 genomes]
rs12540319	0.92[ASN][1000 genomes]
rs1476538	0.90[EUR][1000 genomes]
rs1524522	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1989910	0.88[ASN][1000 genomes]
rs2074341	0.96[ASN][1000 genomes]
rs28418930	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28625460	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3915086	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs3915089	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4141138	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4719892	0.84[EUR][1000 genomes]
rs4722698	0.83[EUR][1000 genomes]
rs4722700	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4722702	0.92[ASN][1000 genomes]
rs4722706	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4722707	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56843699	0.87[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs62454765	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62454789	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62454790	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6953785	0.96[ASN][1000 genomes]
rs757141	0.88[ASN][1000 genomes]
rs7786854	0.96[ASN][1000 genomes]
rs7792305	0.80[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9691111	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27461800-27465200	Enhancers	Stomach Mucosa	stomach
2	chr7:27463200-27465000	Enhancers	Duodenum Mucosa	Duodenum
3	chr7:27463400-27465000	Enhancers	A549	lung
4	chr7:27463400-27471800	Weak transcription	Spleen	Spleen
5	chr7:27463800-27466000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:27464400-27465200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:27464400-27465200	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr7:27464600-27465000	Enhancers	Pancreas	Pancrea
9	chr7:27464600-27465000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
10	chr7:27464600-27465000	Enhancers	Small Intestine	intestine
11	chr7:27464600-27467000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr7:27464800-27469400	Weak transcription	Primary B cells from peripheral blood	blood

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