Variant report

No.	Distal block	Cell Line	Cell type
1	chr7:27384042..27388224-chr7:27459528..27463800,5	MCF-7	breast:
2	chr7:27459213..27461483-chr7:27463058..27464839,2	MCF-7	breast:
3	chr7:27455758..27458549-chr7:27459040..27460885,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10242634	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10252511	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10252636	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10269160	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10272441	0.89[EUR][1000 genomes]
rs10272561	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10272948	0.85[EUR][1000 genomes]
rs10276795	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1112620	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11563570	0.85[ASN][1000 genomes]
rs1476538	0.85[EUR][1000 genomes]
rs17429887	0.97[ASN][1000 genomes]
rs2074340	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28361576	0.98[ASN][1000 genomes]
rs28418930	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3915089	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4141138	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4719892	0.90[EUR][1000 genomes]
rs4722698	0.89[EUR][1000 genomes]
rs4722699	0.95[ASN][1000 genomes]
rs4722700	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4722706	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4722707	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62454789	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62454790	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531024	chr7:27194426-27461954	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	148 gene(s)	inside rSNPs	diseases
2	nsv830930	chr7:27395838-27587355	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27458000-27461000	Enhancers	Stomach Mucosa	stomach
2	chr7:27458600-27462600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:27458800-27461000	Enhancers	Liver	Liver
4	chr7:27458800-27463200	Weak transcription	Spleen	Spleen
5	chr7:27458800-27464000	Weak transcription	HUVEC	blood vessel
6	chr7:27459200-27464600	Weak transcription	Pancreas	Pancrea
7	chr7:27459600-27461800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr7:27460400-27461000	Enhancers	Fetal Stomach	stomach
9	chr7:27460400-27461000	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr7:27460600-27461200	Enhancers	Duodenum Mucosa	Duodenum
11	chr7:27460600-27463200	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr7:27460800-27461000	Enhancers	Colonic Mucosa	Colon
13	chr7:27460800-27461200	Weak transcription	Gastric	stomach
14	chr7:27460800-27463600	Weak transcription	Fetal Intestine Small	intestine

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